[Home] | [Total List]

[184026_at]

Description K05B2.5 /REP_DB=WormBase Gene ID /WP=CE02803 /TR=Q9GYN2 /GB=AAF99981.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 30      6grp_high1_10_10 > 04      4grp_highest_8_8 > 25      4grp_high_8_8 > 59      6grp_highest_nonorm > 51      6grp_total > 24      4grp_total > 60      6grp_highest_sub > De      6grp_cgc > 21      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 640
1 2 3 4 range
A 737.8
(3)
P 		690.1
(2.5)
P 		697.2
(2.6)
P 		186.6
(-3)
P 		551
B 682.2
(1.6)
P 		700.5
(1.8)
P 		823.8
(3)
P 		196.5
(-3)
P 		627
C 683.5
(2.1)
P 		766.1
(3)
P 		741.3
(2.7)
P 		184.2
(-3)
P 		582
avr 701.2
(2.4) 		718.9
(2.6) 		754.1
(3) 		189.1
(-3) 		565

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 460
1 2 3 4 5 6 range
A 827.8
(3)
P 		704.3
(1.4)
P 		569.7
(-0.4)
P 		467.8
(-1.7)
P 		484.1
(-1.5)
P 		367.7
(-3)
P 		460
B 606
(3)
P 		570.9
(2.1)
P 		607.1
(3)
P 		488.7
(-0.1)
P 		440.5
(-1.3)
P 		376.2
(-3)
P 		231
C 788
(3)
P 		576.6
(-0.2)
P 		668
(1.2)
P 		495.9
(-1.4)
P 		515.5
(-1.1)
P 		391.4
(-3)
P 		397
avr 740.6
(3) 		617.3
(1) 		614.9
(0.9) 		484.1
(-1.2) 		480
(-1.3) 		378.4
(-3) 		362
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 241
1 2 3 4 range
A 268.6
(3)
P 		149.8
(0)
P 		182.3
(0.9)
P 		27.3
(-3)
P 		241
B 217.5
(3)
P 		173
(1.5)
P 		190.9
(2.1)
P 		41.9
(-3)
P 		176
C 226.3
(2.2)
P 		220.3
(2)
P 		258.4
(3)
P 		31.1
(-3)
P 		227
avr 237.5
(3) 		181
(1.3) 		210.5
(2.2) 		33.4
(-3) 		204

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 203
1 2 3 4 5 6 range
A 152.6
(-0.6)
P 		250.5
(3)
P 		124.1
(-1.7)
P 		118.6
(-1.9)
P 		146.1
(-0.9)
P 		89.5
(-3)
P 		161
B 210.9
(3)
P 		190
(1.5)
P 		147.4
(-1.7)
P 		129.4
(-3)
P 		179
(0.7)
P 		140.3
(-2.2)
P 		82
C 292.1
(3)
P 		175.9
(-0.6)
P 		170
(-0.8)
P 		99.7
(-3)
P 		166.8
(-0.9)
P 		131
(-2)
P 		192
avr 218.5
(3) 		205.5
(2.2) 		147.2
(-1.2) 		115.9
(-3) 		164
(-0.2) 		120.3
(-2.7) 		103
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184026_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17182
Sequence Type Exemplar sequence
Representative Public ID K05B2.5 NCBI
Target Description K05B2.5 /REP_DB=WormBase Gene ID /WP=CE02803 /TR=Q9GYN2 /GB=AAF99981.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076437(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076437 NCBI Caenorhabditis elegans Patterned Expression Site family member (pes-22) (pes-22) mRNA, complete cds. 9/11 None
GENEFINDER00000040754 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4919022:4929724:-1 10/11 None
SNAP00000040753 ENSEMBL cdna:SNAP chromosome:CEL140:X:4921940:4926939:-1 10/11 None
K05B2.5.1 ENSEMBL cdna:known chromosome:CEL140:X:4921219:4926899:-1 gene:K05B2.5 9/11 None
K05B2.5.2 ENSEMBL cdna:known chromosome:CEL140:X:4921905:4926927:-1 gene:K05B2.5 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4921940-4929259(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol pes-22
Ensembl K05B2.5
Entrez Gene 180766 Entrez gene
SwissProt Q9GYN2 EMBL-EBI
WormBase CE34052 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1601695_AT similar to solute carrier family 16 (monocarboxylic acid transporters), member 14 cfa
CANINE_2:CFA.13436.1.A1_AT similar to solute carrier family 16 (monocarboxylic acid transporters), member 14 cfa
CANINE_2:CFAAFFX.16663.1.S1_AT similar to solute carrier family 16 (monocarboxylic acid transporters), member 14 cfa
DROSOPHILA_2:1630968_AT dm
DROSGENOME1:147949_AT dm
CHICKEN:GGAAFFX.25679.1.S1_S_AT similar to solute carrier family 16 (monocarboxylic acid transporters), member 14 gga
U133_X3P:HS.132554.0.A1_3P_S_AT solute carrier family 16 (monocarboxylic acid transporters), member 14 hs
U133_X3P:HS.132554.0.A1_3P_AT solute carrier family 16 (monocarboxylic acid transporters), member 14 hs
HG-U133_PLUS_2:238029_S_AT solute carrier family 16 (monocarboxylic acid transporters), member 14 hs
HG-U133B:238029_S_AT solute carrier family 16 (monocarboxylic acid transporters), member 14 hs
HG-U95E:74782_AT solute carrier family 16 (monocarboxylic acid transporters), member 14 hs
MOUSE430_2:1430629_AT solute carrier family 16 (monocarboxylic acid transporters), member 14 mm
MOE430B:1430629_AT solute carrier family 16 (monocarboxylic acid transporters), member 14 mm
MOE430B:1439661_AT Solute carrier family 16 (monocarboxylic acid transporters), member 14, mRNA (cDNA clone MGC:32427 IMAGE:5041164) mm
MOUSE430_2:1439661_AT Solute carrier family 16 (monocarboxylic acid transporters), member 14, mRNA (cDNA clone MGC:32427 IMAGE:5041164) mm
Protein Similarities
Method ID Description E-Value
blast AAF99981 Patterned expression site protein 22 [Caenorhabditis elegans] ref|NP_508838.3| Patterned Expression Site family member (pes-22) [Caenorhabditis elegans] 0.0
blast T16564 hypothetical protein K05B2.5 - Caenorhabditis elegans 0.0
blast CAE68667 Hypothetical protein CBG14568 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006862 EMBL-EBI Acyl-CoA thioester hydrolase/bile acid-CoA amino acid N-acetyltransferase 2.3E-87
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508838.3 12 22-44,57-79,89-111,118-140,150-172,179-196,457-479,492-511,521-543,550-572,587-606,615-637
K05B2.5.1 12 22-44,57-79,89-111,118-140,150-172,179-196,457-479,492-511,521-543,550-572,587-606,615-637
K05B2.5.2 12 22-44,57-79,89-111,118-140,150-172,179-196,457-479,492-511,521-543,550-572,587-606,615-637
GENEFINDER00000040754 12 44-66,79-101,111-133,140-162,167-189,202-219,480-502,515-534,544-566,573-595,610-629,638-660
SNAP00000040753 12 48-70,90-112,119-138,148-170,183-205,210-227,422-444,455-477,490-512,517-536,548-570,580-602
Sequence
Target Sequence 
>C. ELEGANS:184026_AT
ttgtctcgggacttttgactcttgcctgtccacttctaaccagtattgctgggcaatatt
tttacgcaattgtcttcggattcatcatttgtaagttattctactattttcaacatttag
aatttgccgcctatatttgcctgacatcaattgtgctcgctgatttaatgggccttgaaa
atcttaccaactcctttggtcttctagtagtggcgagaggtattgcatctctcgttggac
caccgtttgctggaatagtctatgatataactggaagctacgatacagcattctactttg
gtggattagttttgttggtggctggacttatctctgctacaattccatttgttaccaaaa
aagacgcagatactgccgatggaatgccccagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGTCTCGGGACTTTTGACTCTTGC 368 701 1811 Antisense
CTGTCCACTTCTAACCAGTATTGCT 50 239 1836 Antisense
TACGCAATTGTCTTCGGATTCATCA 384 649 1873 Antisense
TAGAATTTGCCGCCTATATTTGCCT 49 653 1928 Antisense
TGCCTGACATCAATTGTGCTCGCTG 710 583 1948 Antisense
GTGCTCGCTGATTTAATGGGCCTTG 593 479 1963 Antisense
CCAACTCCTTTGGTCTTCTAGTAGT 79 275 1997 Antisense
GTTGGACCACCGTTTGCTGGAATAG 193 437 2044 Antisense
GATACAGCATTCTACTTTGGTGGAT 419 423 2092 Antisense
GACTTATCTCTGCTACAATTCCATT 588 371 2135 Antisense
GATACTGCCGATGGAATGCCCCAGT 619 423 2179 Antisense
Sequence Source Affymetrix Proprietary Database