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[184025_s_at]

Description ZC513.7 /REP_DB=WormBase Gene ID /WP=CE28167 /TR=Q23362 /GB=AAC48269.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 37      4grp_total > 55      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 272
1 2 3 4 range
A 356.2
(3)
P 		274
(0.4)
A 		272.6
(0.3)
A 		167.5
(-3)
A 		189
B 203.1
(0.8)
P 		113.6
(-3)
A 		254.5
(3)
A 		170.8
(-0.6)
A 		141
C 385.5
(3)
P 		167.4
(-2.3)
M 		139.8
(-3)
A 		152
(-2.7)
A 		246
avr 314.9
(3) 		185
(-2.1) 		222.3
(-0.7) 		163.4
(-3) 		152

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 354
1 2 3 4 5 6 range
A 461.8
(3)
P 		312.3
(-0.8)
A 		233.1
(-2.9)
A 		228.3
(-3)
A 		409.2
(1.6)
A 		441.5
(2.5)
P 		234
B 406.2
(3)
P 		312.2
(1.1)
P 		107.8
(-3)
P 		206.7
(-1)
A 		192.2
(-1.3)
A 		327.3
(1.4)
P 		298
C 323.9
(1.3)
M 		399.3
(3)
P 		251.9
(-0.3)
A 		322.9
(1.3)
A 		129.5
(-3)
A 		269.5
(0.1)
P 		270
avr 397.3
(3) 		341.3
(1.3) 		197.6
(-3) 		252.6
(-1.3) 		243.6
(-1.6) 		346.1
(1.5) 		200
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 129.7
(3)
P 		59.5
(-1)
A 		71.3
(-0.3)
A 		24.5
(-3)
A 		105
B 64.8
(3)
P 		28.1
(-3)
A 		59
(2.1)
A 		36.4
(-1.6)
A 		37
C 127.6
(3)
P 		48.1
(-1.7)
M 		48.7
(-1.6)
A 		25.6
(-3)
A 		102
avr 107.4
(3) 		45.2
(-1.7) 		59.7
(-0.6) 		28.8
(-3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 85.1
(-0.2)
P 		111.1
(2)
A 		50.8
(-3)
A 		57.9
(-2.4)
A 		123.5
(3)
A 		107.5
(1.7)
P 		73
B 141.3
(3)
P 		103.9
(1.1)
P 		26.2
(-3)
P 		54.8
(-1.5)
A 		78.1
(-0.3)
A 		122
(2)
P 		115
C 120.1
(2.9)
M 		121.8
(3)
P 		64.1
(-1.3)
A 		64.9
(-1.3)
A 		41.9
(-3)
A 		90.2
(0.6)
P 		80
avr 115.5
(3) 		112.3
(2.7) 		47
(-3) 		59.2
(-1.9) 		81.2
(-0) 		106.6
(2.2) 		69
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184025_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12223
Sequence Type Exemplar sequence
Representative Public ID ZC513.7 NCBI
Target Description ZC513.7 /REP_DB=WormBase Gene ID /WP=CE28167 /TR=Q23362 /GB=AAC48269.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) ZC513.7
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
ZC513.7 ZC513.7 /REP_DB=WormBase Gene ID /WP=CE28167 /TR=Q23362 /GB=AAC48269.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8042410-8043245(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:184025_S_AT
gcgtggcctcaagtaccaaggacacctcctcctcctcgattgacggaataaaggagagag
acctccgaaaggcgtcattcattcctccgctcgtctcgaccggtggccgcctccgatctt
cctcaccccaattattttatacatatatctctttcgctacctcgttttcgcgcatttctt
taatgtataacctactttctgtattgattcattgtttttttctgcgtacaaccttgctta
aaactcatattttattgtttagcttggtcggccaaagatacaacctaacatcccggatac
cgtcaaccgattgggccctcgtcgagtcgatcatcagaagcatctggaaatgcccgtttc
agtcatctctgcttcttctcaacgagtttcgtgttttcgatatgtccaaccatccaatgc
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGTGGCCTCAAGTACCAAGGACAC 430 293 17 Antisense
TCCTCCTCCTCGATTGACGGAATAA 37 593 43 Antisense
GAGAGACCTCCGAAAGGCGTCATTC 381 393 72 Antisense
TTCCTCACCCCAATTATTTTATACA 369 697 135 Antisense
TATACATATATCTCTTTCGCTACCT 417 661 154 Antisense
CTCGTTTTCGCGCATTTCTTTAATG 300 233 177 Antisense
TTTTTTCTGCGTACAACCTTGCTTA 607 673 232 Antisense
ACATCCCGGATACCGTCAACCGATT 10 105 304 Antisense
GCATCTGGAAATGCCCGTTTCAGTC 552 309 356 Antisense
CTCTGCTTCTTCTCAACGAGTTTCG 247 231 383 Antisense
TCGATATGTCCAACCATCCAATGCC 159 603 413 Antisense
Sequence Source Affymetrix Proprietary Database