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[184024_at]

Description C18A3.2 /REP_DB=WormBase Gene ID /WP=CE27707 /TR=Q09957 /GB=AAA68371.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 08      4grp_highest_8_8 > 63      4grp_high_8_8 > 27      6grp_highest_nonorm > 73      6grp_total > 09      4grp_total > 28      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 145
1 2 3 4 range
A 464.2
(3)
P 		458.6
(2.4)
P 		403.6
(-3)
P 		437.3
(0.3)
P 		61
B 430.6
(3)
P 		426.1
(2.7)
P 		349.6
(-3)
P 		384.8
(-0.4)
P 		81
C 391.8
(-3)
P 		406.3
(-2.2)
P 		408.1
(-2)
P 		494.5
(3)
P 		103
avr 428.9
(1.8) 		430.3
(2) 		387.1
(-3) 		438.9
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 427
1 2 3 4 5 6 range
A 785
(3)
P 		460.8
(-2)
P 		399
(-3)
P 		482
(-1.7)
P 		532
(-0.9)
P 		434.7
(-2.4)
P 		386
B 528.9
(3)
P 		487.1
(1.5)
P 		357.8
(-3)
P 		458.9
(0.5)
P 		485.2
(1.5)
P 		452
(0.3)
P 		171
C 476.1
(-2.1)
P 		479.5
(-2)
P 		522.2
(-0.7)
P 		641.6
(3)
P 		447.7
(-3)
P 		471.4
(-2.3)
P 		194
avr 596.7
(3) 		475.8
(-1.3) 		426.3
(-3) 		527.5
(0.6) 		488.3
(-0.8) 		452.7
(-2.1) 		170
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 169
(3)
P 		99.6
(-1)
P 		105.5
(-0.6)
P 		64
(-3)
P 		105
B 137.3
(3)
P 		105.2
(-0.4)
P 		81
(-3)
P 		82
(-2.9)
P 		56
C 129.7
(1.7)
P 		116.8
(0.4)
P 		142.2
(3)
P 		83.4
(-3)
P 		59
avr 145.3
(3) 		107.2
(-0.3) 		109.6
(-0.1) 		76.5
(-3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 144.7
(1.5)
P 		163.9
(3)
P 		86.9
(-3)
P 		122.3
(-0.2)
P 		160.5
(2.7)
P 		105.8
(-1.5)
P 		77
B 184
(2.3)
P 		162.1
(1.1)
P 		86.9
(-3)
P 		121.6
(-1.1)
P 		197.1
(3)
P 		168.5
(1.4)
P 		110
C 176.5
(3)
P 		146.3
(-0.8)
P 		132.9
(-2.5)
P 		129
(-3)
P 		144.9
(-1)
P 		157.8
(0.6)
P 		48
avr 168.4
(3) 		157.4
(2) 		102.2
(-3) 		124.3
(-1) 		167.5
(2.9) 		144
(0.8) 		66
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184024_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4316
Sequence Type Exemplar sequence
Representative Public ID C18A3.2 NCBI
Target Description C18A3.2 /REP_DB=WormBase Gene ID /WP=CE27707 /TR=Q09957 /GB=AAA68371.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062725(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062725 NCBI Caenorhabditis elegans C18A3.2 (C18A3.2) mRNA, complete cds. 11/11 None
SNAP00000023265 ENSEMBL cdna:SNAP chromosome:CEL140:II:5718129:5721741:1 11/11 None
GENEFINDER00000023279 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5718111:5719819:1 11/11 None
C18A3.2 ENSEMBL cdna:known chromosome:CEL140:II:5718111:5719953:1 gene:C18A3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5718363-5719816(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C18A3.2
Entrez Gene 173969 Entrez gene
SwissProt Q09957 EMBL-EBI
WormBase CE27707 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
30001 metal ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
46873 metal ion transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA68371 Hypothetical protein C18A3.2 [Caenorhabditis elegans] ref|NP_495126.1| C18A3.2 [Caenorhabditis elegans] 0.0
blast AAA68372 Hypothetical protein C18A3.1 [Caenorhabditis elegans] ref|NP_495127.1| C18A3.1 [Caenorhabditis elegans] 0.0
blast CAE59178 Hypothetical protein CBG02486 [Caenorhabditis briggsae] 1.0E-171
blast AAA68371 Hypothetical protein C18A3.2 [Caenorhabditis elegans] ref|NP_495126.1| C18A3.2 [Caenorhabditis elegans] 1.0E-163
blast CAE59178 Hypothetical protein CBG02486 [Caenorhabditis briggsae] 1.0E-153
blast NP_001027846 ZIP zinc uptake transporter 2 [Takifugu rubripes] gb|AAS21268.1| ZIP zinc uptake transporter 2 [Takifugu rubripes] 2.0E-20
Protein Domains
Database ID Description E-Value
Pfam IPR003689 EMBL-EBI Zinc transporter ZIP 2.8E-103
Pfam IPR003689 EMBL-EBI Zinc transporter ZIP 1.8E-93
Pfam IPR007757 EMBL-EBI MT-A70 5.2E-67
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495126.1 7 4-26,39-61,81-100,185-207,212-234,245-267,333-355
C18A3.2 7 4-26,39-61,81-100,185-207,212-234,245-267,333-355
SNAP00000023265 5 5-22,26-48,170-192,197-219,231-253
GENEFINDER00000023279 7 4-26,39-61,81-100,185-207,212-234,245-267,333-355
Sequence
Target Sequence 
>C. ELEGANS:184024_AT
tcaccatgcaccttcatcaggacattgtcgaactgcccccggtggatcaatgaacattcg
tgtctggtttcttcttcttggaatgtcagttcattcattcttcgaaggagttgctctcgg
cgttcagaatgattcaaacgcgttttggcagattttgattgccgtcctttttcatgaagt
gctgtgttgtgtctcgtatggagttcaactggcaaagcataatgcttcaagaaagtatgc
atggacttcatcaatcttcttgtcagctacaattccagctggaatgattctcgctacaac
gattgacggaatcgaaaacgacatgtggcaaagaattggaagatattggcttgaaggatt
agcagcaggaacttttgtacacgtggctcttgttgagcttcttccaatggagttgcattc
agatgacagcggagaaggaggtcatggacatagtcataatgttattgctgacacaactca
ttcacactcaaatcattcttcttctcattggatttcactcgtcaagtcgctattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACCATGCACCTTCATCAGGACAT 516 625 306 Antisense
ATCAGGACATTGTCGAACTGCCCCC 366 29 321 Antisense
TTCGAAGGAGTTGCTCTCGGCGTTC 709 693 406 Antisense
TTTGATTGCCGTCCTTTTTCATGAA 12 667 459 Antisense
TGAAGTGCTGTGTTGTGTCTCGTAT 582 575 480 Antisense
GGACTTCATCAATCTTCTTGTCAGC 223 525 548 Antisense
AGGAACTTTTGTACACGTGGCTCTT 429 55 672 Antisense
TTGCTGACACAACTCATTCACACTC 456 701 770 Antisense
TTCACACTCAAATCATTCTTCTTCT 313 687 786 Antisense
TCTTCTTCTCATTGGATTTCACTCG 391 617 802 Antisense
GATTTCACTCGTCAAGTCGCTATTC 562 427 816 Antisense
Sequence Source Affymetrix Proprietary Database