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[184022_s_at]

Description C48E7.6 /REP_DB=WormBase Gene ID /WP=CE08821 /TR=O02650 /GB=AAK21360.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 12      4grp_highest_8_8 > 48      4grp_high_8_8 > 42      6grp_highest_nonorm > 70      6grp_total > 24      4grp_total > 54      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 142
1 2 3 4 range
A 336.5
(3)
P 		308.8
(1.7)
P 		273.1
(-0.1)
P 		211.9
(-3)
P 		125
B 283.1
(3)
P 		225.4
(-2.8)
P 		223.8
(-3)
P 		249.1
(-0.4)
P 		59
C 353.8
(3)
P 		304
(0.8)
P 		268.6
(-0.7)
P 		216.7
(-3)
P 		137
avr 324.5
(3) 		279.4
(0.3) 		255.2
(-1.2) 		225.9
(-3) 		99

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 218
1 2 3 4 5 6 range
A 356.4
(3)
P 		295.8
(0.8)
P 		233.6
(-1.4)
P 		197.7
(-2.7)
P 		190.5
(-3)
P 		221.2
(-1.9)
P 		166
B 327.4
(2.8)
P 		332.6
(3)
P 		323.1
(2.6)
P 		274.3
(0.8)
P 		208
(-1.7)
P 		174.9
(-3)
P 		158
C 243.9
(0.6)
P 		314.3
(3)
P 		315.4
(3)
P 		250.9
(0.8)
P 		138.9
(-3)
P 		204.3
(-0.8)
P 		177
avr 309.2
(2.8) 		314.2
(3) 		290.7
(2) 		241
(-0.3) 		179.1
(-3) 		200.1
(-2.1) 		135
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 122.5
(3)
P 		67
(-0.6)
P 		71.4
(-0.4)
P 		31
(-3)
P 		92
B 90.3
(3)
P 		55.7
(-2.4)
P 		51.8
(-3)
P 		53.1
(-2.8)
P 		39
C 117.1
(3)
P 		87.4
(0.8)
P 		93.6
(1.3)
P 		36.5
(-3)
P 		81
avr 110
(3) 		70
(-0.4) 		72.3
(-0.2) 		40.2
(-3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 65.7
(-1.3)
P 		105.2
(3)
P 		50.9
(-2.9)
P 		50.1
(-3)
P 		57.5
(-2.2)
P 		53.8
(-2.6)
P 		55
B 113.9
(3)
P 		110.7
(2.6)
P 		78.5
(-1.4)
P 		72.7
(-2.1)
P 		84.5
(-0.6)
P 		65.2
(-3)
P 		49
C 90.4
(2.4)
P 		95.9
(3)
P 		80.3
(1.2)
P 		50.5
(-2.3)
P 		44.9
(-3)
P 		68.4
(-0.2)
P 		51
avr 90
(1.2) 		103.9
(3) 		69.9
(-1.4) 		57.8
(-3) 		62.3
(-2.4) 		62.5
(-2.4) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184022_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.776
Sequence Type Exemplar sequence
Representative Public ID C48E7.6 NCBI
Target Description C48E7.6 /REP_DB=WormBase Gene ID /WP=CE08821 /TR=O02650 /GB=AAK21360.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059401(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059401 NCBI Caenorhabditis elegans C48E7.6 (C48E7.6) mRNA, complete cds. 11/11 None
GENEFINDER00000002354 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6245739:6257579:1 11/11 None
SNAP00000002338 ENSEMBL cdna:SNAP chromosome:CEL140:I:6247675:6257579:1 11/11 None
C48E7.6 ENSEMBL cdna:known chromosome:CEL140:I:6247675:6257968:1 gene:C48E7.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6247603-6257508(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C48E7.6
Entrez Gene 172317 Entrez gene
SwissProt Q8IG72 EMBL-EBI
WormBase CE08821 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7001 chromosome organization and biogenesis (sensu Eukaryota) inferred from electronic annotation QuickGO AmiGO
7283 spermatogenesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
786 nucleosome inferred from electronic annotation QuickGO AmiGO
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAN60527 Hypothetical protein C48E7.6 [Caenorhabditis elegans] ref|NP_491802.1| C48E7.6 [Caenorhabditis elegans] 0.0
blast CAE67146 Hypothetical protein CBG12570 [Caenorhabditis briggsae] 0.0
blast XP_546320 PREDICTED: similar to chondroitin sulfate proteoglycan 4 [Canis familiaris] 7.0E-96
blast XP_787050 PREDICTED: similar to CG10275-PA [Strongylocentrotus purpuratus] 5.0E-78
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491802.1 1 1628-1650
C48E7.6 1 1628-1650
GENEFINDER00000002354 1 1782-1804
SNAP00000002338 1 1592-1614
Sequence
Target Sequence 
>C. ELEGANS:184022_S_AT
gttcaaccagcacgatttactcttccaatcaccatacttcgtgctgatatggaaaactat
gatccttcgacaactggagatcaaatgattccatattcaaatggtggatctgactcaacg
aaattctcaatatttggagaaaacaatcttccggtagttatacttggagccattgttgcc
gcaacaatattcgttttgatatgtagaagatgcggagaaggaaagaagaaaaataaaaca
aggactccgattaatgcaaaattggatacaccaaccaggcttccaccatcaccatcagag
agtattgatcatgaaaaaccacccgacttgttgggtacaactgtatttgcatcagtgaga
caagccgaggataggatgacaatgaagtcatttaataaaccacctaaaccagagtcatct
tcatcacgaaaacctccaaatcctcgtcgtcaaaatgtatcttctctggattacgcagga
ataacatctgatactccacctccaatgcgattatttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCAACCAGCACGATTTACTCTTC 375 445 4747 Antisense
CTTCCAATCACCATACTTCGTGCTG 334 219 4768 Antisense
AAAACTATGATCCTTCGACAACTGG 152 131 4799 Antisense
ATACTTGGAGCCATTGTTGCCGCAA 401 23 4906 Antisense
GTTGCCGCAACAATATTCGTTTTGA 204 441 4921 Antisense
TTCCACCATCACCATCAGAGAGTAT 572 699 5027 Antisense
GATCATGAAAAACCACCCGACTTGT 498 419 5053 Antisense
CACGAAAACCTCCAAATCCTCGTCG 635 107 5171 Antisense
GTCGTCAAAATGTATCTTCTCTGGA 494 473 5192 Antisense
GAATAACATCTGATACTCCACCTCC 258 327 5225 Antisense
ACTCCACCTCCAATGCGATTATTTG 387 99 5239 Antisense
Sequence Source Affymetrix Proprietary Database