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[184021_at]

Description F56D3.2 /REP_DB=WormBase Gene ID /WP=CE02789 /TR=Q20876 /GB=AAA68354.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 19      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 18.4
(-2.7)
A 		26.3
(-2.3)
A 		13
(-3)
A 		120.9
(3)
A 		108
B 45.7
(1.1)
A 		49.8
(1.6)
A 		6.6
(-3)
A 		63.2
(3)
A 		57
C 9.1
(-2.9)
A 		37.2
(-1.6)
A 		6.6
(-3)
A 		140.3
(3)
A 		134
avr 24.4
(-2.1) 		37.8
(-1.2) 		8.7
(-3) 		108.1
(3) 		99

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 20.8
(-0.9)
A 		32.9
(0.7)
A 		50.4
(3)
A 		43.5
(2.1)
A 		40.1
(1.6)
A 		4.9
(-3)
A 		46
B 6.4
(-2.7)
A 		6.7
(-2.7)
A 		30.1
(1.4)
A 		38.9
(3)
A 		4.9
(-3)
A 		24.1
(0.4)
A 		34
C 14.1
(-2.8)
A 		73
(3)
A 		31.3
(-1.1)
A 		11.9
(-3)
A 		30.5
(-1.2)
A 		33.5
(-0.9)
A 		61
avr 13.8
(-3) 		37.5
(3) 		37.3
(2.9) 		31.4
(1.5) 		25.2
(-0.1) 		20.8
(-1.2) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 6.7
(-1.6)
A 		5.7
(-2)
A 		3.4
(-3)
A 		17.7
(3)
A 		14
B 14.6
(3)
A 		12.3
(1.9)
A 		1.5
(-3)
A 		13.5
(2.5)
A 		13
C 3
(-2.8)
A 		10.7
(-0.6)
A 		2.3
(-3)
A 		23.7
(3)
A 		21
avr 8.1
(-0.8) 		9.6
(-0.3) 		2.4
(-3) 		18.3
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 3.8
(-1.6)
A 		11.7
(2.8)
A 		11
(2.4)
A 		11
(2.4)
A 		12.1
(3)
A 		1.2
(-3)
A 		11
B 2.2
(-2.9)
A 		2.2
(-2.9)
A 		7.3
(0.8)
A 		10.3
(3)
A 		2
(-3)
A 		9
(2.1)
A 		8
C 5.2
(-2.2)
A 		22.3
(3)
A 		8
(-1.3)
A 		2.4
(-3)
A 		9.9
(-0.7)
A 		11.2
(-0.3)
A 		20
avr 3.7
(-3) 		12.1
(3) 		8.8
(0.6) 		7.9
(0) 		8
(0.1) 		7.1
(-0.6) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184021_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4082
Sequence Type Exemplar sequence
Representative Public ID F56D3.2 NCBI
Target Description F56D3.2 /REP_DB=WormBase Gene ID /WP=CE02789 /TR=Q20876 /GB=AAA68354.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000014078 ENSEMBL cdna:SNAP chromosome:CEL140:II:4142741:4142920:-1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4142739-4143324(-) 88.65 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T16485 hypothetical protein F56D3.2 - Caenorhabditis elegans 4.0E-17
Sequence
Target Sequence 
>C. ELEGANS:184021_AT
taaataggcgcggagacgttcctgctctatttgaaactaagagtaaaaataaaattagag
aagtccataaagtaacagaaatctcccgaaaaagtaaaaaatctcgcgggatgaaccaac
taatcgtgttcagcaatctacaagttatctaccgcgtgtgttcaattcgaaggtcatttg
catgtttttcctctatttcaatccgttttttacttcatttgccaatgcaaacaattcaaa
gaaacataggaaaaaaagagagaaatactaatcgaaactcacctccaccacaggggtctt
tctgggaaaccgatccagttgtcagacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAATAGGCGCGGAGACGTTCCTGC 660 639 23 Antisense
GACGTTCCTGCTCTATTTGAAACTA 175 379 37 Antisense
ATCTCGCGGGATGAACCAACTAATC 540 29 123 Antisense
AACTAATCGTGTTCAGCAATCTACA 661 139 140 Antisense
GCAATCTACAAGTTATCTACCGCGT 282 323 155 Antisense
GTTATCTACCGCGTGTGTTCAATTC 144 447 166 Antisense
GTGTTCAATTCGAAGGTCATTTGCA 627 485 180 Antisense
AGGTCATTTGCATGTTTTTCCTCTA 9 59 193 Antisense
AATACTAATCGAAACTCACCTCCAC 282 173 286 Antisense
TCCACCACAGGGGTCTTTCTGGGAA 631 587 306 Antisense
GGGAAACCGATCCAGTTGTCAGACG 449 493 326 Antisense
Sequence Source Affymetrix Proprietary Database