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[184020_at]

Description C16C8.5 /REP_DB=WormBase Gene ID /WP=CE08216 /TR=P91056 /GB=AAB37859.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 0      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 318
1 2 3 4 range
A 76.3
(-0.5)
P 		11.2
(-3)
A 		97.8
(0.4)
A 		165
(3)
P 		154
B 96.2
(-2)
P 		48.1
(-3)
A 		89.4
(-2.1)
A 		329.3
(3)
P 		281
C 69.3
(-1.8)
M 		27.8
(-3)
A 		70.2
(-1.8)
P 		239.2
(3)
P 		211
avr 80.6
(-1.6) 		29
(-3) 		85.8
(-1.4) 		244.5
(3) 		216

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 562
1 2 3 4 5 6 range
A 138.4
(-1.4)
M 		61.2
(-3)
A 		199.4
(-0.2)
P 		224.7
(0.3)
P 		234.6
(0.5)
P 		355.7
(3)
P 		295
B 134.1
(-2.1)
P 		76.1
(-3)
A 		120
(-2.3)
P 		152.2
(-1.9)
P 		325.5
(0.7)
P 		475.7
(3)
P 		400
C 86.5
(-3)
P 		97.3
(-2.9)
A 		143.9
(-2.4)
P 		245.8
(-1.2)
P 		258
(-1.1)
P 		623.6
(3)
P 		537
avr 119.7
(-2.4) 		78.2
(-3) 		154.4
(-1.9) 		207.6
(-1.1) 		272.7
(-0.1) 		485
(3) 		407
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 27.8
(3)
P 		2.4
(-3)
A 		25.6
(2.5)
A 		24.2
(2.1)
P 		25
B 30.7
(-1.1)
P 		11.9
(-3)
A 		20.7
(-2.1)
A 		70.2
(3)
P 		58
C 22.9
(-0.2)
M 		8
(-3)
A 		24.5
(0.1)
P 		40.3
(3)
P 		32
avr 27.1
(0.2) 		7.4
(-3) 		23.6
(-0.4) 		44.9
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 187
1 2 3 4 5 6 range
A 25.5
(-2.7)
M 		21.8
(-3)
A 		43.4
(-1)
P 		57
(0.3)
P 		70.8
(1.5)
P 		86.6
(3)
P 		65
B 46.6
(-2.2)
P 		25.3
(-3)
A 		29.1
(-2.9)
P 		40.3
(-2.4)
P 		132.2
(1.2)
P 		177.4
(3)
P 		152
C 32.1
(-2.9)
P 		29.7
(-3)
A 		36.6
(-2.8)
P 		49.4
(-2.3)
P 		83.5
(-1.2)
P 		208.7
(3)
P 		179
avr 34.7
(-2.6) 		25.6
(-3) 		36.4
(-2.5) 		48.9
(-1.9) 		95.5
(0.2) 		157.6
(3) 		132
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184020_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4285
Sequence Type Exemplar sequence
Representative Public ID C16C8.5 NCBI
Target Description C16C8.5 /REP_DB=WormBase Gene ID /WP=CE08216 /TR=P91056 /GB=AAB37859.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062142(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062142 NCBI Caenorhabditis elegans C16C8.5 (C16C8.5) mRNA, complete cds. 11/11 None
GENEFINDER00000014801 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3442485:3445359:-1 11/11 None
C16C8.5 ENSEMBL cdna:known chromosome:CEL140:II:3444723:3445359:-1 gene:C16C8.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000014777 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3444721-3445358(-) 93.37 100.0
Public Domain and Genome References
Gene Title
Ensembl C16C8.5
Entrez Gene 182672 Entrez gene
SwissProt P91056 EMBL-EBI
WormBase CE08216 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37860 Hypothetical protein C16C8.4 [Caenorhabditis elegans] ref|NP_494542.1| C16C8.4 [Caenorhabditis elegans] 1.0E-109
blast AAB37859 Hypothetical protein C16C8.5 [Caenorhabditis elegans] ref|NP_494543.1| C16C8.5 [Caenorhabditis elegans] 5.0E-88
blast AAB37859 Hypothetical protein C16C8.5 [Caenorhabditis elegans] ref|NP_494543.1| C16C8.5 [Caenorhabditis elegans] 1.0E-85
blast AAB37853 Hypothetical protein C16C8.11 [Caenorhabditis elegans] ref|NP_494548.1| C16C8.11 [Caenorhabditis elegans] 3.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR000626 EMBL-EBI Ubiquitin 8.0E-4
Pfam IPR000626 EMBL-EBI Ubiquitin 2.6E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000014801 1 164-186
Sequence
Target Sequence 
>C. ELEGANS:184020_AT
tcgaaatttccgaacggctccacactcgtcgaaaatcaattgctcttggatgtcaaatcg
ctttgcgcagaactactcgaagaacagaagtcgctaaagaagagacttcaaaaagttgaa
gaaaatcaaaaaattgagaacgcaaagatcaaggaggagctggaaaatctgaagaatggc
ggaaaccgagttgcggacaattcactttttgaaattttcgtgttcgatgattacaagtac
cacgctgtcgaagtacgaaattcttatttgattcgttatgtaagagtgaaggtggcgaat
ctgctcaacaacgatttggttgaaagttttaatctgtattatggtggtcagaagcttcag
gacaatcgctcgattggatcttacaatattgatcagtctcgagaaatttatctaaaaaaa
aaaaaaaaattatctaccctgctcttgaacgttactatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGAAATTTCCGAACGGCTCCACAC 512 601 64 Antisense
GGCTCCACACTCGTCGAAAATCAAT 569 539 79 Antisense
GCTCTTGGATGTCAAATCGCTTTGC 372 301 105 Antisense
ATCGCTTTGCGCAGAACTACTCGAA 595 37 120 Antisense
GAATGGCGGAAACCGAGTTGCGGAC 600 331 237 Antisense
GAGTTGCGGACAATTCACTTTTTGA 488 397 251 Antisense
GATTACAAGTACCACGCTGTCGAAG 241 429 292 Antisense
GAAGGTGGCGAATCTGCTCAACAAC 672 333 351 Antisense
GAAGCTTCAGGACAATCGCTCGATT 513 341 414 Antisense
AAAAAAATTATCTACCCTGCTCTTG 706 129 486 Antisense
TACCCTGCTCTTGAACGTTACTATG 609 649 498 Antisense
Sequence Source Affymetrix Proprietary Database