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[184019_at]

Description C01F1.3 /REP_DB=WormBase Gene ID /WP=CE06744 /TR=Q17556 /GB=AAB00715.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 60      6grp_highest_nonorm > 42      6grp_total > 51      4grp_total > 50      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1570
1 2 3 4 range
A 250.5
(-2.5)
P 		1624.8
(3)
P 		1212.8
(1.4)
P 		123.4
(-3)
A 		1501
B 353.3
(-1.5)
P 		1151.9
(2.6)
P 		1232
(3)
P 		55.1
(-3)
A 		1177
C 200.4
(-2.4)
P 		1379.4
(3)
P 		1356.3
(2.9)
P 		73.1
(-3)
A 		1306
avr 268.1
(-2.2) 		1385.4
(3) 		1267
(2.5) 		83.9
(-3) 		1302

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1094
1 2 3 4 5 6 range
A 1001.7
(1.5)
P 		862.8
(0.8)
P 		999.5
(1.5)
P 		1260.1
(3)
P 		727.7
(0)
P 		194.9
(-3)
P 		1065
B 955.3
(1.9)
P 		749.5
(0.5)
P 		967.9
(2)
P 		1126.5
(3)
P 		773.1
(0.7)
P 		210.9
(-3)
P 		916
C 1079
(1.8)
P 		645.7
(-0.6)
P 		1239.8
(2.7)
P 		1288.5
(3)
P 		817.8
(0.4)
P 		222.1
(-3)
P 		1066
avr 1012
(1.7) 		752.7
(0.2) 		1069.1
(2.1) 		1225
(3) 		772.9
(0.3) 		209.3
(-3) 		1016
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 461
1 2 3 4 range
A 91.2
(-1.7)
P 		352.7
(3)
P 		317.1
(2.4)
P 		18.1
(-3)
A 		335
B 112.7
(-0.8)
P 		284.5
(3)
P 		285.5
(3)
P 		11.7
(-3)
A 		274
C 66.3
(-2.3)
P 		396.6
(2)
P 		472.7
(3)
P 		12.3
(-3)
A 		460
avr 90.1
(-1.7) 		344.6
(2.8) 		358.4
(3) 		14
(-3) 		344

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 353
1 2 3 4 5 6 range
A 184.7
(0)
P 		306.8
(2.7)
P 		217.7
(0.8)
P 		319.6
(3)
P 		219.6
(0.8)
P 		47.4
(-3)
P 		272
B 332.4
(3)
P 		249.5
(1)
P 		235
(0.7)
P 		298.4
(2.2)
P 		314.1
(2.6)
P 		78.6
(-3)
P 		254
C 399.9
(3)
P 		197
(-0.7)
P 		315.5
(1.4)
P 		259.1
(0.4)
P 		264.6
(0.5)
P 		74.4
(-3)
P 		326
avr 305.7
(3) 		251.1
(1.6) 		256.1
(1.8) 		292.4
(2.7) 		266.1
(2) 		66.8
(-3) 		239
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184019_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4449
Sequence Type Exemplar sequence
Representative Public ID C01F1.3 NCBI
Target Description C01F1.3 /REP_DB=WormBase Gene ID /WP=CE06744 /TR=Q17556 /GB=AAB00715.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062353(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062353 NCBI Caenorhabditis elegans C01F1.3 (C01F1.3) mRNA, complete cds. 11/11 None
SNAP00000028115 ENSEMBL cdna:SNAP chromosome:CEL140:II:4295094:4298876:1 11/11 None
GENEFINDER00000028118 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4295094:4298924:1 11/11 None
C01F1.3.2 ENSEMBL cdna:known chromosome:CEL140:II:4295091:4298931:1 gene:C01F1.3 11/11 None
C01F1.3.1 ENSEMBL cdna:known chromosome:CEL140:II:4295093:4298931:1 gene:C01F1.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4295092-4298875(+) 99.63 100.0
Public Domain and Genome References
Gene Title
Ensembl C01F1.3
Entrez Gene 173762 Entrez gene
SwissProt Q17556 EMBL-EBI
WormBase CE06744 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:260985_AT NAD-dependent epimerase/dehydratase family protein at
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
9225 nucleotide-sugar metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB00715 Hypothetical protein C01F1.3 [Caenorhabditis elegans] ref|NP_494754.1| C01F1.3 [Caenorhabditis elegans] 0.0
blast CAE60116 Hypothetical protein CBG03656 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001509 EMBL-EBI NAD-dependent epimerase/dehydratase 4.6E-66
Sequence
Target Sequence 
>C. ELEGANS:184019_AT
attggggctgcactatacgtacattggcactggttacatgtttgcttatgataaggaaca
cccgattggaggcgctgagttcaaagaggaagacgagccgacattctttggttccgctta
ttctgttgtcaaaggattcaccgacagacaaatgaactatttcaatcaaaatggctggga
aaacctcaatgtacgaataacgcttccactcagtttggacttggaacaaccacgaaactt
gttatcaaaaatcatcaaatacaaggaattatttgatattccagtgtcactgaccatcct
tccagattgtatgaatgcaatgtgcaatttgatggaacaacgaagcggtggaactctgaa
cttggtcaatccggagccaattagtctttacgaagttgtgaagatttataaggagattgt
cgacgagactgtcaatcctacatcaattggagtggaaactgaacgtgctcaacatcttct
ggcaaccaagggaaattgcgcattggacactgaaaaactgcagtccttggcgccggtttt
gtcggcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGGGGCTGCACTATACGTACATT 388 3 1311 Antisense
AAGGAACACCCGATTGGAGGCGCTG 483 157 1363 Antisense
AAGACGAGCCGACATTCTTTGGTTC 129 153 1400 Antisense
TTGGTTCCGCTTATTCTGTTGTCAA 64 705 1418 Antisense
AACGCTTCCACTCAGTTTGGACTTG 449 145 1509 Antisense
TCACTGACCATCCTTCCAGATTGTA 333 627 1597 Antisense
AGCGGTGGAACTCTGAACTTGGTCA 625 79 1654 Antisense
TCCGGAGCCAATTAGTCTTTACGAA 18 593 1680 Antisense
GACGAGACTGTCAATCCTACATCAA 497 379 1732 Antisense
AACGTGCTCAACATCTTCTGGCAAC 368 143 1772 Antisense
TCCTTGGCGCCGGTTTTGTCGGCGA 204 589 1834 Antisense
Sequence Source Affymetrix Proprietary Database