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[184017_at]

Description F13H8.3 /REP_DB=WormBase Gene ID /WP=CE02637 /TR=Q19431 /GB=AAK31485.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 61      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 161
1 2 3 4 range
A 125.7
(2.8)
P 		128.4
(3)
A 		101.7
(1)
A 		49.9
(-3)
A 		79
B 163.4
(3)
M 		119
(1.3)
A 		88.9
(0.2)
A 		2
(-3)
A 		161
C 120
(2.1)
A 		131.9
(3)
P 		106.7
(1)
M 		55.5
(-3)
A 		76
avr 136.4
(3) 		126.4
(2.4) 		99.1
(0.8) 		35.8
(-3) 		101

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 215
1 2 3 4 5 6 range
A 78
(-1.7)
A 		83.6
(-1.6)
A 		130.2
(-0.3)
P 		247.5
(3)
P 		141
(0)
P 		32.9
(-3)
A 		215
B 67.7
(-2.4)
M 		129.5
(0.4)
P 		100.7
(-0.9)
P 		119.9
(-0)
P 		184.8
(3)
P 		55.1
(-3)
A 		130
C 50.6
(-3)
A 		139.7
(1)
P 		118.6
(0.1)
A 		183.5
(3)
P 		167.2
(2.3)
P 		62.9
(-2.4)
A 		133
avr 65.4
(-2.3) 		117.6
(0) 		116.5
(-0) 		183.6
(3) 		164.3
(2.1) 		50.3
(-3) 		133
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 45.8
(3)
P 		27.9
(0.2)
A 		26.6
(0)
A 		7.3
(-3)
A 		39
B 52.1
(3)
M 		29.4
(0.4)
A 		20.6
(-0.7)
A 		0.4
(-3)
A 		52
C 39.7
(3)
A 		37.9
(2.6)
P 		37.2
(2.5)
M 		9.4
(-3)
A 		30
avr 45.9
(3) 		31.7
(0.9) 		28.1
(0.3) 		5.7
(-3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 14.4
(-2.3)
A 		29.7
(-0.6)
A 		28.4
(-0.8)
P 		62.8
(3)
P 		42.5
(0.8)
P 		8
(-3)
A 		55
B 23.6
(-2.7)
M 		43.1
(-0.5)
P 		24.4
(-2.6)
P 		31.8
(-1.8)
P 		75.1
(3)
P 		20.6
(-3)
A 		55
C 18.8
(-3)
A 		42.6
(1)
P 		30.2
(-1.1)
A 		36.9
(0.1)
P 		54.1
(3)
P 		21.1
(-2.6)
A 		35
avr 18.9
(-2.7) 		38.5
(0.2) 		27.7
(-1.4) 		43.8
(1) 		57.2
(3) 		16.6
(-3) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184017_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4072
Sequence Type Exemplar sequence
Representative Public ID F13H8.3 NCBI
Target Description F13H8.3 /REP_DB=WormBase Gene ID /WP=CE02637 /TR=Q19431 /GB=AAK31485.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062853(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062853 NCBI Caenorhabditis elegans F13H8.3 (F13H8.3) mRNA, complete cds. 11/11 None
SNAP00000031304 ENSEMBL cdna:SNAP chromosome:CEL140:II:6264093:6265408:1 11/11 None
GENEFINDER00000031320 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6262608:6265408:1 11/11 None
F13H8.3 ENSEMBL cdna:known chromosome:CEL140:II:6264009:6265442:1 gene:F13H8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6262604-6265405(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F13H8.3
Entrez Gene 174037 Entrez gene
SwissProt Q19431 EMBL-EBI
WormBase CE32626 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1641443_AT dm
DROSGENOME1:146289_AT dm
Protein Similarities
Method ID Description E-Value
blast AAN65330 Hypothetical protein F13H8.3 [Caenorhabditis elegans] ref|NP_495254.2| F13H8.3 [Caenorhabditis elegans] 0.0
blast T16062 hypothetical protein F13H8.3 - Caenorhabditis elegans 0.0
blast CAE59278 Hypothetical protein CBG02610 [Caenorhabditis briggsae] 1.0E-133
Protein Domains
Database ID Description E-Value
Pfam IPR001910 EMBL-EBI Inosine/uridine-preferring nucleoside hydrolase 1.0E-126
Pfam IPR001910 EMBL-EBI Inosine/uridine-preferring nucleoside hydrolase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:184017_AT
gggtgggaactatcttggtgttggaaatactcaattcaattcaactgctgaattcaattt
tctaatggatcctgaggctgcacatattgttctttcatctcttcatacaacgatgattcc
atgggatacttgcttcctgaaaggaccagaatacaatgaggaagttgattatgaagaatc
actcaaccagaaaacaaaattatcatattttctgagcaatataactgctcgtggtcgaca
atacaacaaagcatctggacaaatatatgcatttgttgatgatattgcagtttcagtggc
tattgatccccgtattgcagtgagaaatatgacactgtgttcaagtgttgaattgaaaaa
agaagctgtggctcgagggcaggttacggtagattggctgactactaaatatgatattgt
ggatcgtgcattcaagacatcatcaaacaaaaatgatgccaactggttgtctcaaacatt
tgttactgaatacaatgtgaaacgagttaatgaaatgctcatcagagcagtcaaattatc
cgatcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGTGGGAACTATCTTGGTGTTGGA 246 497 777 Antisense
GGATCCTGAGGCTGCACATATTGTT 604 511 843 Antisense
GCACATATTGTTCTTTCATCTCTTC 364 317 856 Antisense
GATTCCATGGGATACTTGCTTCCTG 421 433 891 Antisense
ATAACTGCTCGTGGTCGACAATACA 175 25 997 Antisense
GCAGTTTCAGTGGCTATTGATCCCC 85 313 1063 Antisense
ATTGATCCCCGTATTGCAGTGAGAA 284 3 1078 Antisense
GAAGCTGTGGCTCGAGGGCAGGTTA 44 343 1138 Antisense
GGATCGTGCATTCAAGACATCATCA 476 511 1197 Antisense
GCCAACTGGTTGTCTCAAACATTTG 143 279 1234 Antisense
CAGAGCAGTCAAATTATCCGATCAA 13 207 1299 Antisense
Sequence Source Affymetrix Proprietary Database