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[184016_at]

Description W03A5.5 /REP_DB=WormBase Gene ID /WP=CE01423 /TR=Q23139 /GB=AAA50729.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 28      4grp_total > 32      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 74.6
(-0.7)
A 		28.9
(-3)
A 		149.6
(3)
A 		110
(1)
P 		121
B 72.3
(-2.3)
A 		67.8
(-3)
A 		104.6
(3)
A 		99.4
(2.2)
A 		37
C 95.5
(0.5)
A 		75
(-3)
A 		89.9
(-0.5)
A 		110.2
(3)
A 		35
avr 80.8
(-0.5) 		57.2
(-3) 		114.7
(3) 		106.5
(2.1) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 53.1
(-3)
A 		74.4
(2.5)
A 		61.9
(-0.7)
A 		58
(-1.7)
A 		76.2
(3)
A 		74.2
(2.5)
A 		23
B 77.1
(3)
A 		52.6
(-0.9)
A 		64
(0.9)
A 		39.5
(-3)
A 		60
(0.3)
A 		68.2
(1.6)
A 		38
C 60.6
(2.2)
A 		64.3
(3)
A 		51.1
(0)
A 		51.3
(0.1)
A 		45
(-1.3)
A 		37.6
(-3)
A 		27
avr 63.6
(2.9) 		63.8
(3) 		59
(1) 		49.6
(-3) 		60.4
(1.6) 		60
(1.4) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 27.2
(0.8)
A 		6.3
(-3)
A 		39.1
(3)
A 		16.1
(-1.2)
P 		33
B 23.1
(2.1)
A 		16.7
(-3)
A 		24.2
(3)
A 		21.2
(0.6)
A 		8
C 31.6
(3)
A 		21.5
(-1.7)
A 		31.3
(2.9)
A 		18.6
(-3)
A 		13
avr 27.3
(1.5) 		14.8
(-3) 		31.5
(3) 		18.6
(-1.6) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 9.8
(-3)
A 		26.5
(3)
A 		13.5
(-1.7)
A 		14.7
(-1.2)
A 		23
(1.7)
A 		18.1
(-0)
A 		17
B 26.8
(3)
A 		17.5
(-0.4)
A 		15.5
(-1.2)
A 		10.5
(-3)
A 		24.4
(2.1)
A 		25.4
(2.5)
A 		16
C 22.5
(3)
A 		19.6
(1.6)
A 		13
(-1.7)
A 		10.3
(-3)
A 		14.6
(-0.9)
A 		12.6
(-1.9)
A 		12
avr 19.7
(2) 		21.2
(3) 		14
(-1.6) 		11.8
(-3) 		20.7
(2.7) 		18.7
(1.4) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184016_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6656
Sequence Type Exemplar sequence
Representative Public ID W03A5.5 NCBI
Target Description W03A5.5 /REP_DB=WormBase Gene ID /WP=CE01423 /TR=Q23139 /GB=AAA50729.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065756(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065756 NCBI Caenorhabditis elegans W03A5.5 (W03A5.5) mRNA, complete cds. 11/11 None
GENEFINDER00000014246 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5431934:5439908:-1 10/11 None
SNAP00000014244 ENSEMBL cdna:SNAP chromosome:CEL140:III:5438782:5439908:-1 11/11 None
W03A5.5 ENSEMBL cdna:known chromosome:CEL140:III:5438782:5439908:-1 gene:W03A5.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5438802-5439907(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W03A5.5
Entrez Gene 189141 Entrez gene
SwissProt Q23139 EMBL-EBI
WormBase CE30198 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA50730 Hypothetical protein W03A5.4 [Caenorhabditis elegans] ref|NP_498156.1| W03A5.4 [Caenorhabditis elegans] 1.0E-153
blast CAE61338 Hypothetical protein CBG05177 [Caenorhabditis briggsae] 1.0E-116
blast AAA50729 Hypothetical protein W03A5.5 [Caenorhabditis elegans] ref|NP_498157.2| W03A5.5 [Caenorhabditis elegans] 7.0E-89
blast AAA50729 Hypothetical protein W03A5.5 [Caenorhabditis elegans] ref|NP_498157.2| W03A5.5 [Caenorhabditis elegans] 2.0E-84
blast AAA50729 Hypothetical protein W03A5.5 [Caenorhabditis elegans] ref|NP_498157.2| W03A5.5 [Caenorhabditis elegans] 2.0E-70
blast CAE61339 Hypothetical protein CBG05178 [Caenorhabditis briggsae] 3.0E-47
blast CAE61339 Hypothetical protein CBG05178 [Caenorhabditis briggsae] 4.0E-47
Sequence
Target Sequence 
>C. ELEGANS:184016_AT
tttacagtcatcatcgtcacgtggtgcttcgacagacagtctcaatacgacaagcaatgg
attttcggatggtggctccaatcttctcccaccaaaacccaaccgaatcggatgcgccgc
cactggagcccaatcggagaccgatctgcgtttcgtaacatcccgcgatacacacagctc
tattccactcaacgagccatttggatttggcgagaaatcgccgcgagcctttatgtcgga
aaatgatttatccgctggagccgccggagcatcgacagattttcccgaagttacaagaac
accgagctatttgagaatatcatgtgcattgaatggttatacaaaatcaccgaacaagtc
ggatctcacaccaatagctcctcatccacctgtatcaacaatgggtgaaagttttgttga
aaggtataagttttttagaatttttcttcataggaaaatcccaaaaacgttcaagaatgt
tctcacagccaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTACAGTCATCATCGTCACGTGGT 202 673 30 Antisense
TCACGTGGTGCTTCGACAGACAGTC 319 625 46 Antisense
AACCCAACCGAATCGGATGCGCCGC 206 1 125 Antisense
ACTGGAGCCCAATCGGAGACCGATC 370 97 151 Antisense
CGATCTGCGTTTCGTAACATCCCGC 381 249 171 Antisense
TATTCCACTCAACGAGCCATTTGGA 48 661 210 Antisense
AGAAATCGCCGCGAGCCTTTATGTC 150 73 242 Antisense
AAAATGATTTATCCGCTGGAGCCGC 135 133 269 Antisense
GCCGGAGCATCGACAGATTTTCCCG 342 283 292 Antisense
ACAAGTCGGATCTCACACCAATAGC 4 115 383 Antisense
GTTCAAGAATGTTCTCACAGCCACA 654 445 498 Antisense
Sequence Source Affymetrix Proprietary Database