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[184014_s_at]

Description W09B7.1 /REP_DB=WormBase Gene ID /WP=CE21283 /TR=Q9N5A5 /GB=AAF60392.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 60      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 3.2
(-3)
A 		6.6
(1.4)
A 		3.3
(-2.9)
A 		7.8
(3)
A 		5
B 3.8
(-3)
A 		4.9
(-1.2)
A 		4
(-2.7)
A 		7.5
(3)
A 		4
C 3.4
(-2.6)
A 		4.5
(-0.6)
A 		3.2
(-3)
A 		6.5
(3)
A 		3
avr 3.5
(-3) 		5.3
(-0.2) 		3.5
(-3) 		7.3
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 6.6
(3)
A 		2.9
(-3)
A 		3.2
(-2.5)
A 		3.9
(-1.4)
A 		5
(0.4)
A 		4.3
(-0.7)
A 		4
B 3.3
(-0.6)
A 		3.3
(-0.6)
A 		4.5
(3)
A 		3.6
(0.3)
A 		2.5
(-3)
A 		3.2
(-0.9)
A 		2
C 2.6
(-2)
A 		3.7
(-0.4)
A 		3.5
(-0.7)
A 		6
(3)
A 		2.4
(-2.3)
A 		1.9
(-3)
A 		4
avr 4.2
(1.7) 		3.3
(-2.1) 		3.7
(-0.4) 		4.5
(3) 		3.3
(-2.1) 		3.1
(-3) 		1
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 1.2
(0.6)
A 		1.4
(3)
A 		0.9
(-3)
A 		1.1
(-0.6)
A 		0
B 1.2
(-0.4)
A 		1.2
(-0.4)
A 		0.9
(-3)
A 		1.6
(3)
A 		1
C 1.1
(-3)
A 		1.3
(3)
A 		1.1
(-3)
A 		1.1
(-3)
A 		0
avr 1.2
(1) 		1.3
(3) 		1
(-3) 		1.3
(3) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 1.2
(0.8)
A 		1
(-0.8)
A 		0.7
(-3)
A 		1
(-0.8)
A 		1.5
(3)
A 		1
(-0.8)
A 		1
B 1.1
(0)
A 		1.1
(0)
A 		1.1
(0)
A 		1
(-3)
A 		1
(-3)
A 		1.2
(3)
A 		0
C 1
(1)
A 		1.1
(2)
A 		0.9
(0)
A 		1.2
(3)
A 		0.8
(-1)
A 		0.6
(-3)
A 		1
avr 1.1
(3) 		1.1
(3) 		0.9
(-3) 		1.1
(3) 		1.1
(3) 		0.9
(-3) 		0
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184014_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11530
Sequence Type Exemplar sequence
Representative Public ID W09B7.1 NCBI
Target Description W09B7.1 /REP_DB=WormBase Gene ID /WP=CE21283 /TR=Q9N5A5 /GB=AAF60392.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072870(11), NM_072884(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072870 NCBI Caenorhabditis elegans W09B7.1 (W09B7.1) mRNA, complete cds. 11/11 None
NM_072884 NCBI Caenorhabditis elegans F07B7.1 (F07B7.1) mRNA, complete cds. 11/11 None
SNAP00000015102 ENSEMBL cdna:SNAP chromosome:CEL140:V:8874864:8876049:1 11/11 None
GENEFINDER00000015155 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8874864:8875950:1 11/11 None
SNAP00000023233 ENSEMBL cdna:SNAP chromosome:CEL140:V:8832770:8833955:1 11/11 None
GENEFINDER00000023238 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8832770:8833856:1 11/11 None
W09B7.1 ENSEMBL cdna:known chromosome:CEL140:V:8832770:8834028:1 gene:W09B7.1 11/11 None
F07B7.1 ENSEMBL cdna:known chromosome:CEL140:V:8874864:8876122:1 gene:F07B7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8874864-8875952(+) 55.81 92.6
chrV:8832770-8833858(+) 55.81 92.6
Public Domain and Genome References
Gene Title

Ensembl W09B7.1
F07B7.1
Entrez Gene 184111 Entrez gene
189306 Entrez gene
SwissProt Q9N5A5 EMBL-EBI
WormBase CE21283 Wormbase
CE21283 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60392 Hypothetical protein W09B7.1 [Caenorhabditis elegans] gb|AAK84505.1| Hypothetical protein F07B7.1 [Caenorhabditis elegans] ref|NP_505271.1| W09B7.1 [Caenorhabditis elegans] ref|NP_505285.1| F07B7.1 [Caenorhabditis elegans] 0.0
blast AAF60392 Hypothetical protein W09B7.1 [Caenorhabditis elegans] gb|AAK84505.1| Hypothetical protein F07B7.1 [Caenorhabditis elegans] ref|NP_505271.1| W09B7.1 [Caenorhabditis elegans] ref|NP_505285.1| F07B7.1 [Caenorhabditis elegans] 1.0E-176
blast AAF60392 Hypothetical protein W09B7.1 [Caenorhabditis elegans] gb|AAK84505.1| Hypothetical protein F07B7.1 [Caenorhabditis elegans] ref|NP_505271.1| W09B7.1 [Caenorhabditis elegans] ref|NP_505285.1| F07B7.1 [Caenorhabditis elegans] 1.0E-173
blast CAB16473 Hypothetical protein Y43F4A.3 [Caenorhabditis elegans] ref|NP_499727.1| Y43F4A.3 [Caenorhabditis elegans] 6.0E-73
Sequence
Target Sequence 
>C. ELEGANS:184014_S_AT
gcgcagttgcacacggtcgaaagcatctgcaatcgcctggagacgcaaataatgcatgag
caccacgtggacaacgattcaagacaagcacaagcccgccgctcatcatccgctgaatcc
accggaacttcttccaagggaaatctgcaaaagaacaaggacaaaaagccggcaaaagcc
tactcaggctcatattgcatcttctgccgcagagcctcccacaaatccatcgactgcaga
acaacgacattctacctccacagagagaatcgtgcccgctccaatggatactgtaacaag
tgccttcaaccgctgattcaatccgacgcaggtcaccacttgagctgcacagagccgaaa
gtctcgtgcgcctaccgccacgagcactcggagaatcaagccaagagtggtcacaacgag
gtattctgtccgctccaatttggcaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGCAGTTGCACACGGTCGAAAGCA 634 287 427 Antisense
GTCGAAAGCATCTGCAATCGCCTGG 559 473 442 Antisense
GCATGAGCACCACGTGGACAACGAT 583 309 480 Antisense
GATTCAAGACAAGCACAAGCCCGCC 102 431 502 Antisense
ATCATCCGCTGAATCCACCGGAACT 29 31 531 Antisense
AAAGCCGGCAAAAGCCTACTCAGGC 304 123 591 Antisense
TACTCAGGCTCATATTGCATCTTCT 308 645 607 Antisense
CTCCACAGAGAGAATCGTGCCCGCT 343 233 682 Antisense
ACTGTAACAAGTGCCTTCAACCGCT 585 95 716 Antisense
ACCACTTGAGCTGCACAGAGCCGAA 369 83 761 Antisense
TTCTGTCCGCTCCAATTTGGCAAAA 148 695 850 Antisense
Sequence Source Affymetrix Proprietary Database