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[184013_at]

Description D1005.4 /REP_DB=WormBase Gene ID /WP=CE07000 /TR=Q18913 /GB=AAB00586.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 52      4grp_high_8_8 > 62      6grp_highest_nonorm > 71      6grp_total > 52      4grp_total > 56      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 271
1 2 3 4 range
A 126.6
(-2.7)
P 		237.1
(1.6)
P 		273
(3)
P 		118.1
(-3)
P 		155
B 156.9
(-0.4)
P 		235.6
(1.3)
P 		312
(3)
P 		41.5
(-3)
A 		271
C 158.5
(-1.2)
P 		192.8
(0.1)
P 		271.5
(3)
P 		109.8
(-3)
P 		162
avr 147.3
(-1.2) 		221.8
(1) 		285.5
(3) 		89.8
(-3) 		196

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 446
1 2 3 4 5 6 range
A 191.4
(-2.4)
P 		228.7
(-1.9)
P 		590.3
(3)
P 		333
(-0.5)
P 		311.6
(-0.7)
P 		144
(-3)
P 		446
B 198.4
(-2.8)
P 		382.4
(1.9)
P 		423.5
(3)
P 		355.9
(1.3)
P 		306.4
(-0)
P 		189.9
(-3)
P 		234
C 226.4
(-1.7)
P 		343.5
(2.2)
P 		310.7
(1.1)
P 		366.7
(3)
P 		248.8
(-1)
P 		189
(-3)
P 		178
avr 205.4
(-2.3) 		318.2
(0.2) 		441.5
(3) 		351.9
(1) 		288.9
(-0.4) 		174.3
(-3) 		267
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 46.1
(0.2)
P 		51.5
(0.8)
P 		71.4
(3)
P 		17.3
(-3)
P 		54
B 50
(0.9)
P 		58.2
(1.7)
P 		72.3
(3)
P 		8.9
(-3)
A 		63
C 52.5
(-0.3)
P 		55.4
(-0.1)
P 		94.6
(3)
P 		18.5
(-3)
P 		76
avr 49.5
(0.2) 		55
(0.7) 		79.4
(3) 		14.9
(-3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 35.3
(-3)
P 		81.3
(-0)
P 		128.6
(3)
P 		84.5
(0.2)
P 		94
(0.8)
P 		35.1
(-3)
P 		94
B 69
(-3)
P 		127.3
(3)
P 		102.8
(0.5)
P 		94.3
(-0.4)
P 		124.5
(2.7)
P 		70.8
(-2.8)
P 		58
C 83.9
(-0)
P 		104.8
(3)
P 		79.1
(-0.7)
P 		73.7
(-1.5)
P 		80.5
(-0.5)
P 		63.3
(-3)
P 		42
avr 62.7
(-2.2) 		104.5
(3) 		103.5
(2.9) 		84.2
(0.5) 		99.7
(2.4) 		56.4
(-3) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184013_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18376
Sequence Type Exemplar sequence
Representative Public ID D1005.4 NCBI
Target Description D1005.4 /REP_DB=WormBase Gene ID /WP=CE07000 /TR=Q18913 /GB=AAB00586.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075880(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075880 NCBI Caenorhabditis elegans D1005.4 (D1005.4) mRNA, complete cds. 11/11 None
D1005.4 ENSEMBL cdna:known chromosome:CEL140:X:1484791:1485702:-1 gene:D1005.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027966 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1484790-1485702(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D1005.4
Entrez Gene 183882 Entrez gene
SwissProt Q18913 EMBL-EBI
WormBase CE07000 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB00586 Hypothetical protein D1005.4 [Caenorhabditis elegans] ref|NP_508281.1| D1005.4 [Caenorhabditis elegans] 6.0E-63
blast CAE56724 Hypothetical protein CBG24511 [Caenorhabditis briggsae] 1.0E-25
Sequence
Target Sequence 
>C. ELEGANS:184013_AT
gaaggcaagacgcatacagtcggtaagacagctatcacctgcaatggcctttattgtttg
acgctttctgagcaagcatcttatttcacagtgttcaatggaacgtgtcccgatccgaca
gtgtctattacaaattgtgataccaacggagtgagctgtcaaaaggaaaagcttggtgat
gttgatgttaaagcgtgttgctgtaattacgatttctgcaatttatcaggacagagcttt
actactttttcagcaatatatgttttttgcatagcctctcgtttaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGGCAAGACGCATACAGTCGGTA 329 333 22 Antisense
AGACAGCTATCACCTGCAATGGCCT 112 73 47 Antisense
AATGGCCTTTATTGTTTGACGCTTT 147 161 64 Antisense
GACGCTTTCTGAGCAAGCATCTTAT 223 381 81 Antisense
AGCAAGCATCTTATTTCACAGTGTT 55 77 92 Antisense
TTCAATGGAACGTGTCCCGATCCGA 664 683 115 Antisense
GTCCCGATCCGACAGTGTCTATTAC 485 475 128 Antisense
GATACCAACGGAGTGAGCTGTCAAA 28 425 160 Antisense
GTGTTGCTGTAATTACGATTTCTGC 124 485 216 Antisense
GGACAGAGCTTTACTACTTTTTCAG 37 527 250 Antisense
GTTTTTTGCATAGCCTCTCGTTTAA 229 449 283 Antisense
Sequence Source Affymetrix Proprietary Database