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[184011_at]

Description T16A1.3 /REP_DB=WormBase Gene ID /WP=CE13708 /TR=P91446 /GB=AAB37874.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 75      4grp_total > 09      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 6.3
(-3)
A 		23.5
(3)
A 		12.6
(-0.8)
A 		21.4
(2.3)
A 		17
B 14.2
(-0.2)
A 		2
(-3)
A 		1.9
(-3)
A 		28.1
(3)
A 		26
C 2.9
(-2.6)
A 		1.8
(-3)
A 		12.6
(1.4)
A 		16.5
(3)
A 		15
avr 7.8
(-3) 		9.1
(-2.5) 		9
(-2.5) 		22
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 1.7
(-3)
A 		1.5
(-3)
A 		5.1
(-2.3)
A 		32.5
(3)
A 		6.2
(-2.1)
A 		18.4
(0.3)
A 		31
B 22.7
(2.7)
A 		1
(-3)
A 		23.8
(3)
A 		19.8
(1.9)
A 		9.8
(-0.7)
A 		18.7
(1.7)
A 		23
C 1.6
(-3)
A 		13.6
(-0.6)
A 		12.6
(-0.8)
A 		2
(-2.9)
A 		3.2
(-2.7)
A 		31.9
(3)
A 		30
avr 8.7
(-1.9) 		5.4
(-3) 		13.8
(-0.1) 		18.1
(1.3) 		6.4
(-2.7) 		23
(3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 2.3
(-3)
A 		5.1
(3)
A 		3.3
(-0.9)
A 		3.1
(-1.3)
A 		3
B 4.5
(1.4)
A 		0.5
(-2.9)
A 		0.4
(-3)
A 		6
(3)
A 		6
C 1
(-2.2)
A 		0.5
(-3)
A 		4.4
(3)
A 		2.8
(0.5)
A 		4
avr 2.6
(-1.2) 		2
(-3) 		2.7
(-0.9) 		4
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.3
(-3)
A 		0.5
(-2.8)
A 		1.1
(-2.4)
A 		8.2
(3)
A 		1.9
(-1.8)
A 		4.5
(0.2)
A 		8
B 7.9
(3)
A 		0.3
(-3)
A 		5.8
(1.3)
A 		5.3
(0.9)
A 		4
(-0.1)
A 		7
(2.3)
A 		8
C 0.6
(-2.9)
A 		4.1
(-0.8)
A 		3.2
(-1.4)
A 		0.4
(-3)
A 		1
(-2.7)
A 		10.7
(3)
A 		10
avr 2.9
(-1.7) 		1.6
(-3) 		3.4
(-1.1) 		4.6
(0.1) 		2.3
(-2.3) 		7.4
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184011_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5321
Sequence Type Exemplar sequence
Representative Public ID T16A1.3 NCBI
Target Description T16A1.3 /REP_DB=WormBase Gene ID /WP=CE13708 /TR=P91446 /GB=AAB37874.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061775(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061775 NCBI Caenorhabditis elegans T16A1.3 (T16A1.3) mRNA, complete cds. 11/11 None
T16A1.3 ENSEMBL cdna:known chromosome:CEL140:II:2084130:2084892:1 gene:T16A1.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022088 6/11 Cross Hyb Matching Probes None
GENEFINDER00000022101 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2084128-2084891(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T16A1.3
Entrez Gene 188543 Entrez gene
SwissProt P91446 EMBL-EBI
WormBase CE13708 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37874 Hypothetical protein T16A1.3 [Caenorhabditis elegans] ref|NP_494176.1| T16A1.3 [Caenorhabditis elegans] 1.0E-119
blast AAB09127 Hypothetical protein M02B7.1 [Caenorhabditis elegans] ref|NP_500419.1| M02B7.1 [Caenorhabditis elegans] 4.0E-31
blast AAK31412 Hypothetical protein C16A11.6 [Caenorhabditis elegans] ref|NP_494746.2| C16A11.6 [Caenorhabditis elegans] 8.0E-30
Sequence
Target Sequence 
>C. ELEGANS:184011_AT
tttttccacgttggcacttttgccaaatcatcacaaatcgaaaataaatttattcctact
tttgccgtcactttaaaagtgattttcttcttaactctcgcgaattccacgatggcttcc
agaccactcacgtatccagctttagtttctacaattaaatacttggatccaaatatcaga
tttcaacttgtagctaggaatccttcactcgaaaatctcggaaaatctcagacactcatt
attgatgaccttgtattggaccgcaattcaatttctataaataatgtggaatataagctt
ggcaccgagaataagttcgacgaggacccgaaaactctggctatccggcaactggaaggc
agacgccagttgatcaatgttaaatggctgaagattgaaggagaaggccagattctcgac
cttcttgagcgtcttccccagtgcttccagagattcaagatgaaaatgatcttcaattgg
tcgatgcagctccaccaattgatcgatcctcggagtattccgttggacggaatttccctc
aacgaagctttatcactgaattctcggcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTTCCACGTTGGCACTTTTGCCA 654 673 64 Antisense
AAGTGATTTTCTTCTTAACTCTCGC 426 159 140 Antisense
TAACTCTCGCGAATTCCACGATGGC 515 639 155 Antisense
GCTAGGAATCCTTCACTCGAAAATC 484 303 256 Antisense
TGATGACCTTGTATTGGACCGCAAT 288 563 306 Antisense
GACCCGAAAACTCTGGCTATCCGGC 389 373 388 Antisense
AAGGCAGACGCCAGTTGATCAATGT 533 161 419 Antisense
GAAGGCCAGATTCTCGACCTTCTTG 605 331 466 Antisense
TCAATTGGTCGATGCAGCTCCACCA 590 633 536 Antisense
GATCGATCCTCGGAGTATTCCGTTG 330 417 564 Antisense
AGCTTTATCACTGAATTCTCGGCCT 124 79 609 Antisense
Sequence Source Affymetrix Proprietary Database