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[184010_at]

Description K05F1.1 /REP_DB=WormBase Gene ID /WP=CE02804 /TR=Q21247 /GB=AAA68718.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 28      4grp_total > 26      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 4.5
(-3)
A 		7.4
(2)
A 		7.2
(1.6)
A 		8
(3)
A 		4
B 7.7
(3)
A 		7
(1.6)
A 		4.8
(-3)
A 		5.8
(-0.9)
A 		3
C 4.7
(-3)
A 		8.3
(1.2)
A 		5.6
(-2)
A 		9.9
(3)
A 		5
avr 5.6
(-3) 		7.6
(2.2) 		5.9
(-2.2) 		7.9
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 5.3
(-0.2)
A 		4.9
(-0.8)
A 		4.9
(-0.8)
A 		3.6
(-3)
A 		5.3
(-0.2)
A 		7.2
(3)
A 		4
B 5
(0.8)
A 		4
(-1.9)
A 		4
(-1.9)
A 		3.7
(-2.7)
A 		5.8
(3)
A 		3.6
(-3)
A 		2
C 6.1
(1.6)
A 		6.8
(3)
A 		5.2
(-0.2)
A 		5
(-0.6)
A 		3.8
(-3)
A 		4.4
(-1.8)
A 		3
avr 5.5
(3) 		5.2
(1.7) 		4.7
(-0.4) 		4.1
(-3) 		5
(0.9) 		5.1
(1.3) 		1
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 1.6
(0.4)
A 		1.6
(0.4)
A 		1.9
(3)
A 		1.2
(-3)
A 		1
B 2.4
(3)
A 		1.7
(-0.2)
A 		1.1
(-3)
A 		1.2
(-2.5)
A 		1
C 1.5
(-3)
A 		2.4
(3)
A 		1.9
(-0.3)
A 		1.7
(-1.7)
A 		1
avr 1.8
(1.8) 		1.9
(3) 		1.6
(-0.6) 		1.4
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 1
(-2.3)
A 		1.8
(3)
A 		1.1
(-1.7)
A 		0.9
(-3)
A 		1.6
(1.7)
A 		1.7
(2.3)
A 		1
B 1.7
(0.2)
A 		1.3
(-1.6)
A 		1
(-3)
A 		1
(-3)
A 		2.3
(3)
A 		1.4
(-1.2)
A 		1
C 2.3
(3)
A 		2.1
(2.1)
A 		1.3
(-1.6)
A 		1
(-3)
A 		1.2
(-2.1)
A 		1.5
(-0.7)
A 		1
avr 1.7
(3) 		1.7
(3) 		1.1
(-2.1) 		1
(-3) 		1.7
(3) 		1.5
(1.3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184010_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4561
Sequence Type Exemplar sequence
Representative Public ID K05F1.1 NCBI
Target Description K05F1.1 /REP_DB=WormBase Gene ID /WP=CE02804 /TR=Q21247 /GB=AAA68718.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062746(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062746 NCBI Caenorhabditis elegans K05F1.1 (K05F1.1) mRNA, complete cds. 11/11 None
SNAP00000031248 ENSEMBL cdna:SNAP chromosome:CEL140:II:5802704:5803645:1 11/11 None
GENEFINDER00000031250 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5801196:5803645:1 11/11 None
K05F1.1 ENSEMBL cdna:known chromosome:CEL140:II:5801347:5803645:1 gene:K05F1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5801611-5803642(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K05F1.1
Entrez Gene 187028 Entrez gene
SwissProt Q21247 EMBL-EBI
WormBase CE35989 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68718 Hypothetical protein K05F1.1 [Caenorhabditis elegans] ref|NP_495147.3| K05F1.1 [Caenorhabditis elegans] 0.0
blast AAA68718 Hypothetical protein K05F1.1 [Caenorhabditis elegans] ref|NP_495147.3| K05F1.1 [Caenorhabditis elegans] 1.0E-120
Protein Domains
Database ID Description E-Value
Pfam IPR002593 EMBL-EBI Protein of unknown function DX 1.5E-54
Pfam IPR002593 EMBL-EBI Protein of unknown function DX 1.5E-54
Pfam IPR002593 EMBL-EBI Protein of unknown function DX 1.5E-54
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495147.3 1 374-393
K05F1.1 1 374-393
SNAP00000031248 1 168-187
GENEFINDER00000031250 1 396-415
Sequence
Target Sequence 
>C. ELEGANS:184010_AT
aagttccggctgacaccgagttttgtcctgggaatccgataccactgggtcacgaacaaa
aatgttttggagcagttcagcaagatgaactatctggaagcgctcatccatccggtgtat
gctttaaagggtattactgtcctgttgtaaatgtgactgctcattctcttcccaaaaaac
cttacataactcgtgtccaatgtgatgcaaaatgcaaaattccgatcaattgggctcacg
cgttttgcgattcaaaacttggaaaaattgtttttattggcacagaattcatattctcga
caaaacctcaacatgatgatcacagaaaaatgccaaaaccaagaaaattaatagttttca
aaattatttcatatcttttcagacattgtacaaatggagatgtatgtgtgataggatgga
tcagggatgagaaaaataagttgacgccgtcagctgaatgcttgccaaatccactgagac
catcaaccatcatccatgcgaattatttgaaagatttgatgtacctctggctactttttg
gt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTTCCGGCTGACACCGAGTTTTG 282 155 437 Antisense
GAATCCGATACCACTGGGTCACGAA 648 173 468 Antisense
AACTATCTGGAAGCGCTCATCCATC 680 139 524 Antisense
CTCATCCATCCGGTGTATGCTTTAA 144 229 539 Antisense
TAAATGTGACTGCTCATTCTCTTCC 355 641 584 Antisense
AAACCTTACATAACTCGTGTCCAAT 318 125 613 Antisense
AATTGGGCTCACGCGTTTTGCGATT 512 177 664 Antisense
TTGACGCCGTCAGCTGAATGCTTGC 214 705 877 Antisense
CTTGCCAAATCCACTGAGACCATCA 358 219 897 Antisense
CCATCAACCATCATCCATGCGAATT 440 271 916 Antisense
GATGTACCTCTGGCTACTTTTTGGT 586 407 954 Antisense
Sequence Source Affymetrix Proprietary Database