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[184009_at]

Description K03H9.1 /REP_DB=WormBase Gene ID /WP=CE01995 /TR=Q09404 /GB=AAC46667.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 07      4grp_total > 36      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 8
(3)
A 		6.9
(2)
A 		1.2
(-3)
A 		2.9
(-1.5)
A 		7
B 0.6
(-3)
A 		3.1
(1.2)
A 		1.2
(-2)
A 		4.2
(3)
A 		4
C 1.2
(-1.7)
A 		1.4
(-1.3)
A 		0.6
(-3)
A 		3.4
(3)
A 		3
avr 3.3
(1.9) 		3.8
(3) 		1
(-3) 		3.5
(2.4) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 48.8
(3)
A 		5.6
(-2.5)
A 		21
(-0.5)
A 		1.4
(-3)
A 		3.2
(-2.8)
A 		1.9
(-2.9)
A 		47
B 0.5
(-3)
A 		9.1
(3)
A 		5.1
(0.2)
A 		1.1
(-2.6)
A 		2.5
(-1.6)
A 		1.4
(-2.4)
A 		9
C 0.9
(-2.5)
A 		4.5
(3)
A 		1.7
(-1.3)
A 		1.6
(-1.5)
A 		2.2
(-0.5)
A 		0.6
(-3)
A 		4
avr 16.7
(3) 		6.4
(-1) 		9.3
(0.1) 		1.4
(-3) 		2.6
(-2.5) 		1.3
(-3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 2.9
(3)
A 		1.5
(-0.2)
A 		0.3
(-3)
A 		0.4
(-2.8)
A 		3
B 0.2
(-3)
A 		0.8
(2.1)
A 		0.3
(-2.1)
A 		0.9
(3)
A 		1
C 0.4
(0)
A 		0.4
(0)
A 		0.2
(-3)
A 		0.6
(3)
A 		0
avr 1.2
(3) 		0.9
(1) 		0.3
(-3) 		0.6
(-1) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 9
(3)
A 		2
(-1.8)
A 		4.6
(-0)
A 		0.3
(-3)
A 		1
(-2.5)
A 		0.5
(-2.9)
A 		9
B 0.2
(-3)
A 		3
(3)
A 		1.2
(-0.9)
A 		0.3
(-2.8)
A 		1
(-1.3)
A 		0.5
(-2.4)
A 		3
C 0.3
(-2.5)
A 		1.4
(3)
A 		0.4
(-2)
A 		0.3
(-2.5)
A 		0.7
(-0.5)
A 		0.2
(-3)
A 		1
avr 3.2
(3) 		2.1
(0.7) 		2.1
(0.7) 		0.3
(-3) 		0.9
(-1.8) 		0.4
(-2.8) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184009_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5315
Sequence Type Exemplar sequence
Representative Public ID K03H9.1 NCBI
Target Description K03H9.1 /REP_DB=WormBase Gene ID /WP=CE01995 /TR=Q09404 /GB=AAC46667.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062894(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062894 NCBI Caenorhabditis elegans K03H9.1 (K03H9.1) mRNA, complete cds. 11/11 None
SNAP00000017295 ENSEMBL cdna:SNAP chromosome:CEL140:II:6431019:6432360:1 10/11 None
GENEFINDER00000017298 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6426240:6432779:1 10/11 None
K03H9.1 ENSEMBL cdna:known chromosome:CEL140:II:6431208:6431822:1 gene:K03H9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6431204-6431819(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K03H9.1
Entrez Gene 186967 Entrez gene
SwissProt Q09404 EMBL-EBI
WormBase CE01995 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46668 Collagen protein 75 [Caenorhabditis elegans] ref|NP_495294.1| COLlagen family member (col-75) [Caenorhabditis elegans] sp|Q09578|YRF2_CAEEL Putative cuticle collagen K03H9.2 1.0E-102
blast AAC46667 Hypothetical protein K03H9.1 [Caenorhabditis elegans] ref|NP_495295.1| K03H9.1 [Caenorhabditis elegans] 8.0E-96
blast AAC46667 Hypothetical protein K03H9.1 [Caenorhabditis elegans] ref|NP_495295.1| K03H9.1 [Caenorhabditis elegans] 6.0E-82
blast AAC46667 Hypothetical protein K03H9.1 [Caenorhabditis elegans] ref|NP_495295.1| K03H9.1 [Caenorhabditis elegans] 4.0E-81
blast CAE59325 Hypothetical protein CBG02667 [Caenorhabditis briggsae] 5.0E-79
blast AAC46701 Hypothetical protein F58F12.3 [Caenorhabditis elegans] ref|NP_495288.1| F58F12.3 [Caenorhabditis elegans] sp|Q09400|YRB3_CAEEL Hypothetical protein F58F12.3 in chromosome II 6.0E-44
blast AAC46669 Hypothetical protein K03H9.3 [Caenorhabditis elegans] ref|NP_495293.1| K03H9.3 [Caenorhabditis elegans] 6.0E-25
blast AAC46701 Hypothetical protein F58F12.3 [Caenorhabditis elegans] ref|NP_495288.1| F58F12.3 [Caenorhabditis elegans] sp|Q09400|YRB3_CAEEL Hypothetical protein F58F12.3 in chromosome II 1.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR008160 EMBL-EBI Collagen triple helix repeat 1.3E-4
Pfam IPR008160 EMBL-EBI Collagen triple helix repeat 2.1E-13
Pfam IPR008160 EMBL-EBI Collagen triple helix repeat 2.0E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000017298 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:184009_AT
aagttggaccttgaagtcttctatgacaaatacacattgcattacatcattgcgcttgct
gatattcagaaacggttgagagacacaatccagttggcagtggaaaactttagcttctca
taccatgattataatgagttaaatagggaaaagattccaattagtgttgatggaaggtct
ggattattggaaacgtttaaggacaaatcgaagcttccagttgagaaagtcccagaggac
gttctatgggagaaagcacttgatagtatgtcatatgaagaagcacgtagttccattgta
caagcactcagagagaatagcaacagttctttattgcacattagagcatgcaagttagaa
aaatcaagcgaatctcagtatgagtggattaaactggctctactcaatgataagctggac
aaccgaatgcaaatgttgatgtacgcaaagaaaaagtgtcgccctcatacatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTTGGACCTTGAAGTCTTCTATG 368 155 37 Antisense
TGCATTACATCATTGCGCTTGCTGA 351 579 74 Antisense
GAGAGACACAATCCAGTTGGCAGTG 138 393 114 Antisense
AAACTTTAGCTTCTCATACCATGAT 142 127 141 Antisense
GAAGCTTCCAGTTGAGAAAGTCCCA 556 341 246 Antisense
GAAAGTCCCAGAGGACGTTCTATGG 159 361 261 Antisense
GAAGAAGCACGTAGTTCCATTGTAC 553 339 313 Antisense
GTTCCATTGTACAAGCACTCAGAGA 492 441 326 Antisense
GTGGATTAAACTGGCTCTACTCAAT 229 487 420 Antisense
GATAAGCTGGACAACCGAATGCAAA 413 421 445 Antisense
GAAAAAGTGTCGCCCTCATACATAT 613 353 486 Antisense
Sequence Source Affymetrix Proprietary Database