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[184008_at]

Description D1022.5 /REP_DB=WormBase Gene ID /WP=CE02579 /TR=Q18927 /GB=AAB93338.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 15      4grp_total > 12      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 58.6
(2.3)
A 		43.2
(-2.5)
A 		60.8
(3)
A 		41.7
(-3)
A 		19
B 39.5
(0.7)
A 		40.4
(1)
A 		30.5
(-3)
A 		45.2
(3)
A 		15
C 49.5
(-1.6)
A 		42.1
(-2.1)
A 		28.8
(-3)
A 		117.8
(3)
P 		89
avr 49.2
(-1) 		41.9
(-2.6) 		40
(-3) 		68.2
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 77.3
(1.3)
A 		80
(1.6)
A 		92.2
(3)
M 		41.7
(-2.8)
A 		66
(0)
M 		39.8
(-3)
A 		52
B 81.1
(3)
P 		78.8
(2.7)
P 		38.1
(-2)
A 		51.5
(-0.5)
A 		53.1
(-0.3)
A 		29.9
(-3)
A 		51
C 96.1
(3)
P 		92.5
(2.8)
P 		21.3
(-1.9)
A 		4.2
(-3)
A 		31.6
(-1.2)
A 		27.9
(-1.5)
A 		92
avr 84.8
(3) 		83.8
(2.9) 		50.5
(-0.9) 		32.5
(-3) 		50.2
(-1) 		32.5
(-3) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 21.3
(3)
A 		9.4
(-1.7)
A 		15.9
(0.9)
A 		6.1
(-3)
A 		15
B 12.6
(3)
A 		10
(0.2)
A 		7.1
(-3)
A 		9.6
(-0.3)
A 		6
C 16.4
(0.9)
A 		12.1
(-1.7)
A 		10
(-3)
A 		19.9
(3)
P 		10
avr 16.8
(3) 		10.5
(-3) 		11
(-2.5) 		11.9
(-1.7) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 14.2
(-1.6)
A 		28.5
(3)
A 		20.1
(0.3)
M 		10.6
(-2.7)
A 		19.9
(0.3)
M 		9.7
(-3)
A 		19
B 28.2
(3)
P 		26.2
(2.4)
P 		9.3
(-3)
A 		13.6
(-1.6)
A 		21.6
(0.9)
A 		11.2
(-2.4)
A 		19
C 35.6
(3)
P 		28.2
(1.7)
P 		5.4
(-2.2)
A 		0.8
(-3)
A 		10.2
(-1.4)
A 		9.4
(-1.5)
A 		35
avr 26
(2.5) 		27.6
(3) 		11.6
(-2) 		8.3
(-3) 		17.2
(-0.2) 		10.1
(-2.4) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184008_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4844
Sequence Type Exemplar sequence
Representative Public ID D1022.5 NCBI
Target Description D1022.5 /REP_DB=WormBase Gene ID /WP=CE02579 /TR=Q18927 /GB=AAB93338.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063161(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063161 NCBI Caenorhabditis elegans D1022.5 (D1022.5) mRNA, complete cds. 11/11 None
SNAP00000004645 ENSEMBL cdna:SNAP chromosome:CEL140:II:7457596:7458734:-1 11/11 None
GENEFINDER00000004662 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7457551:7458734:-1 11/11 None
D1022.5 ENSEMBL cdna:known chromosome:CEL140:II:7457596:7458734:-1 gene:D1022.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7457592-7458731(-) 96.62 100.0
Public Domain and Genome References
Gene Title
Ensembl D1022.5
Entrez Gene 183901 Entrez gene
SwissProt Q18927 EMBL-EBI
WormBase CE02579 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_495562 D1022.5 [Caenorhabditis elegans] gb|AAB93338.1| Hypothetical protein D1022.5 [Caenorhabditis elegans] 1.0E-123
blast NP_495562 D1022.5 [Caenorhabditis elegans] gb|AAB93338.1| Hypothetical protein D1022.5 [Caenorhabditis elegans] 1.0E-116
blast CAE67534 Hypothetical protein CBG13057 [Caenorhabditis briggsae] 3.0E-95
blast CAE67534 Hypothetical protein CBG13057 [Caenorhabditis briggsae] 1.0E-93
blast NP_495561 D1022.4 [Caenorhabditis elegans] gb|AAB93337.1| Hypothetical protein D1022.4 [Caenorhabditis elegans] 8.0E-72
blast NP_495561 D1022.4 [Caenorhabditis elegans] gb|AAB93337.1| Hypothetical protein D1022.4 [Caenorhabditis elegans] 9.0E-72
Protein Domains
Database ID Description E-Value
Pfam IPR002925 EMBL-EBI Dienelactone hydrolase 3.7E-24
Pfam IPR002925 EMBL-EBI Dienelactone hydrolase 1.6E-61
Pfam IPR002925 EMBL-EBI Dienelactone hydrolase 3.3E-26
Pfam IPR002925 EMBL-EBI Dienelactone hydrolase 5.4E-58
Sequence
Target Sequence 
>C. ELEGANS:184008_AT
gaatgagaaaacttcccggtgtccttgtgttccctgcattccgcggaatcaccgaatttg
aaaaagaaaaagcgaaggctcttgctcaggagggctacatcgcattggcagctgatccat
ttggaaagggaattcatccaaaagacaaagcagaatgttttgcaattgtacgcccaatga
taattgagaggacacttggattttgttttggaggcctatgtgcgcttgatctagccaggt
acaatgttggactgaaagcagccatttcatttcatggcacactgactccaatacctgatg
ctccacttgataagattattgaaacagctgtccaggttcatcatggagattcggatgctc
atattccaaaagaacaagtcgatggattccacgtggagatgagaactcgaaatgcggatt
ttgtgttttccagtcatgcacatgctgaacatggattcacagagccagatgctgattctt
tcggacttcccggagttaaatataacaaaaaagctgcggatcgatcatgggcatct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGAGAAAACTTCCCGGTGTCCT 655 329 98 Antisense
GCATTCCGCGGAATCACCGAATTTG 480 307 133 Antisense
AAAGCGAAGGCTCTTGCTCAGGAGG 417 125 166 Antisense
GCTCAGGAGGGCTACATCGCATTGG 484 301 181 Antisense
ATCGCATTGGCAGCTGATCCATTTG 213 37 196 Antisense
TTTGGAGGCCTATGTGCGCTTGATC 506 665 304 Antisense
GCACACTGACTCCAATACCTGATGC 424 317 374 Antisense
GAAACAGCTGTCCAGGTTCATCATG 12 357 418 Antisense
GTGTTTTCCAGTCATGCACATGCTG 33 485 520 Antisense
GAGCCAGATGCTGATTCTTTCGGAC 331 385 559 Antisense
AGCTGCGGATCGATCATGGGCATCT 348 81 609 Antisense
Sequence Source Affymetrix Proprietary Database