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[184007_at]

Description R07C3.8 /REP_DB=WormBase Gene ID /WP=CE12536 /TR=O16768 /GB=AAB66238.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 07      6grp_total > 14      4grp_total > 54      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 147.9
(3)
P 		130.7
(0.2)
A 		116.8
(-2.1)
M 		111
(-3)
A 		37
B 197.3
(3)
P 		129.9
(-1.8)
P 		113.4
(-3)
A 		118.7
(-2.6)
A 		84
C 137.4
(3)
P 		123
(0.7)
A 		130.8
(2)
P 		99
(-3)
A 		38
avr 160.9
(3) 		127.9
(-0.9) 		120.3
(-1.7) 		109.6
(-3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 120
1 2 3 4 5 6 range
A 207.7
(3)
P 		150.5
(0.1)
P 		142.7
(-0.3)
A 		155.9
(0.4)
P 		88.2
(-3)
A 		118.5
(-1.5)
P 		120
B 183.6
(3)
P 		156.7
(0.9)
P 		151.6
(0.5)
A 		130.3
(-1.2)
P 		107
(-3)
P 		107.4
(-3)
A 		77
C 171.5
(3)
P 		155
(1.7)
P 		136.2
(0.2)
P 		170.3
(2.9)
A 		104.4
(-2.4)
M 		96.8
(-3)
A 		75
avr 187.6
(3) 		154.1
(0.7) 		143.5
(-0) 		152.2
(0.6) 		99.9
(-3) 		107.6
(-2.5) 		88
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 53.8
(3)
P 		28.4
(-1.1)
A 		30.5
(-0.7)
M 		16.3
(-3)
A 		38
B 62.9
(3)
P 		32.1
(-1.9)
P 		26.3
(-2.8)
A 		25.3
(-3)
A 		38
C 45.5
(3)
P 		35.4
(0.9)
A 		45.6
(3)
P 		16.7
(-3)
A 		29
avr 54.1
(3) 		32
(-0.8) 		34.1
(-0.5) 		19.4
(-3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 38.3
(-0.4)
P 		53.5
(3)
P 		31.1
(-2)
A 		39.5
(-0.1)
P 		26.6
(-3)
A 		28.9
(-2.5)
P 		27
B 63.9
(3)
P 		52.2
(0.6)
P 		36.8
(-2.5)
A 		34.5
(-3)
P 		43.5
(-1.2)
P 		40
(-1.9)
A 		29
C 63.6
(3)
P 		47.3
(-0.1)
P 		34.7
(-2.6)
P 		34.2
(-2.7)
A 		33.8
(-2.7)
M 		32.4
(-3)
A 		31
avr 55.3
(3) 		51
(1.8) 		34.2
(-2.9) 		36.1
(-2.4) 		34.6
(-2.8) 		33.8
(-3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184007_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5263
Sequence Type Exemplar sequence
Representative Public ID R07C3.8 NCBI
Target Description R07C3.8 /REP_DB=WormBase Gene ID /WP=CE12536 /TR=O16768 /GB=AAB66238.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061448(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061448 NCBI Caenorhabditis elegans R07C3.8 (R07C3.8) mRNA, complete cds. 11/11 None
SNAP00000022235 ENSEMBL cdna:SNAP chromosome:CEL140:II:913691:915180:1 11/11 None
GENEFINDER00000022253 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:912012:915180:1 11/11 None
R07C3.8 ENSEMBL cdna:known chromosome:CEL140:II:913686:915213:1 gene:R07C3.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:913689-915179(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R07C3.8
Entrez Gene 173473 Entrez gene
SwissProt O16768 EMBL-EBI
WormBase CE12536 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66238 Hypothetical protein R07C3.8 [Caenorhabditis elegans] ref|NP_493849.1| R07C3.8 [Caenorhabditis elegans] 0.0
blast AAB66230 Hypothetical protein R07C3.9 [Caenorhabditis elegans] ref|NP_493848.1| R07C3.9 [Caenorhabditis elegans] 1.0E-163
blast NP_493860 C32B5.10 [Caenorhabditis elegans] gb|AAB37966.1| Hypothetical protein C32B5.10 [Caenorhabditis elegans] 2.0E-91
blast NP_493860 C32B5.10 [Caenorhabditis elegans] gb|AAB37966.1| Hypothetical protein C32B5.10 [Caenorhabditis elegans] 5.0E-91
blast AAB66230 Hypothetical protein R07C3.9 [Caenorhabditis elegans] ref|NP_493848.1| R07C3.9 [Caenorhabditis elegans] 3.0E-62
Sequence
Target Sequence 
>C. ELEGANS:184007_AT
ggaagacggtgcccaattcaagtgaaaaagctgtcagttgagtgtaaagggattctacgg
gttcctgcagacctccgctttaaagtgagccatctggaaatcctgggctctggagtggat
aagatagttgaagctttcaagccgctcataggaaggatccaaacaatcactgtcaacgac
gactttaacatcagtcatcctatattccaaaccgccctaatcctcaagaacccaaatgaa
aacttgtttggcgcagcttctgcaagcaatgttagagtggaaaataacgagcagttctca
agtctttccgaaagagtcgtagatcttatcagaatctggcaatctcatggccacaaaatc
ggaacaatctggaacttttcgatgcggtcgcaagaacaagctctggatagtataatgtac
ctccgaagacagcttggcgccagctttagtggacataaaaacctctcacagtatggtcgt
agtgctgcaatttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAGACGGTGCCCAATTCAAGTGA 694 525 571 Antisense
TAAAGGGATTCTACGGGTTCCTGCA 409 641 615 Antisense
GCAGACCTCCGCTTTAAAGTGAGCC 217 313 637 Antisense
GAAGCTTTCAAGCCGCTCATAGGAA 14 343 700 Antisense
TCAGTCATCCTATATTCCAAACCGC 382 623 761 Antisense
ACGAGCAGTTCTCAAGTCTTTCCGA 691 91 857 Antisense
GAATCTGGCAATCTCATGGCCACAA 168 329 902 Antisense
ATCTGGAACTTTTCGATGCGGTCGC 283 35 937 Antisense
AATGTACCTCCGAAGACAGCTTGGC 428 163 984 Antisense
ACAGCTTGGCGCCAGCTTTAGTGGA 703 107 999 Antisense
AGTATGGTCGTAGTGCTGCAATTTC 332 63 1040 Antisense
Sequence Source Affymetrix Proprietary Database