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[184006_at]

Description C17A2.4 /REP_DB=WormBase Gene ID /WP=CE08242 /TR=O16533 /GB=AAB66030.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 41      4grp_total > 36      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 27.5
(-2)
A 		59.8
(3)
P 		20.7
(-3)
A 		43.2
(0.5)
A 		39
B 26.7
(1.1)
P 		34.3
(3)
A 		9.7
(-3)
A 		26.1
(1)
A 		25
C 34.1
(3)
A 		27.8
(1)
A 		22.1
(-0.9)
A 		15.4
(-3)
A 		19
avr 29.4
(0.1) 		40.6
(3) 		17.5
(-3) 		28.2
(-0.2) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 37.2
(1.8)
A 		30.5
(0.9)
P 		45.9
(3)
P 		25.3
(0.2)
A 		13.9
(-1.4)
A 		2
(-3)
A 		44
B 19.8
(2.5)
A 		8.2
(-1.4)
A 		10.6
(-0.6)
A 		17.1
(1.6)
A 		21.3
(3)
A 		3.3
(-3)
A 		18
C 13.8
(-2.1)
A 		26.7
(0.8)
A 		14.8
(-1.9)
A 		36.9
(3)
A 		9.6
(-3)
A 		23.9
(0.1)
A 		27
avr 23.6
(2) 		21.8
(1.3) 		23.8
(2.1) 		26.4
(3) 		14.9
(-1.1) 		9.7
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 10
(0.6)
A 		13
(3)
P 		5.4
(-3)
A 		6.3
(-2.3)
A 		8
B 8.5
(3)
P 		8.5
(3)
A 		2.2
(-3)
A 		5.6
(0.2)
A 		6
C 11.3
(3)
A 		8
(0.7)
A 		7.7
(0.5)
A 		2.6
(-3)
A 		9
avr 9.9
(3) 		9.8
(2.9) 		5.1
(-2.6) 		4.8
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 6.9
(0.7)
A 		10.8
(3)
P 		10
(2.5)
P 		6.4
(0.4)
A 		4.2
(-0.8)
A 		0.5
(-3)
A 		10
B 6.9
(1.6)
A 		2.7
(-1.8)
A 		2.6
(-1.9)
A 		4.5
(-0.3)
A 		8.6
(3)
A 		1.2
(-3)
A 		7
C 5.1
(-0.6)
A 		8.1
(3)
A 		3.8
(-2.2)
A 		7.4
(2.2)
A 		3.1
(-3)
A 		8
(2.9)
A 		5
avr 6.3
(1.7) 		7.2
(3) 		5.5
(0.5) 		6.1
(1.4) 		5.3
(0.1) 		3.2
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184006_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4549
Sequence Type Exemplar sequence
Representative Public ID C17A2.4 NCBI
Target Description C17A2.4 /REP_DB=WormBase Gene ID /WP=CE08242 /TR=O16533 /GB=AAB66030.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062266(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062266 NCBI Caenorhabditis elegans C17A2.4 (C17A2.4) mRNA, complete cds. 11/11 None
GENEFINDER00000028377 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3840071:3841341:1 10/11 None
C17A2.4 ENSEMBL cdna:known chromosome:CEL140:II:3839855:3841265:1 gene:C17A2.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000028367 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3839853-3841264(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C17A2.4
Entrez Gene 182700 Entrez gene
SwissProt O16533 EMBL-EBI
WormBase CE08242 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
5975 carbohydrate metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5794 Golgi apparatus inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8107 galactoside 2-alpha-L-fucosyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB66030 Hypothetical protein C17A2.4 [Caenorhabditis elegans] ref|NP_494667.1| C17A2.4 [Caenorhabditis elegans] 0.0
blast AAB66030 Hypothetical protein C17A2.4 [Caenorhabditis elegans] ref|NP_494667.1| C17A2.4 [Caenorhabditis elegans] 1.0E-126
blast NP_503601 Y5H2B.1 [Caenorhabditis elegans] gb|AAK84621.1| Hypothetical protein Y5H2B.1 [Caenorhabditis elegans] 2.0E-92
blast NP_503283 F31F4.17 [Caenorhabditis elegans] gb|AAG24094.1| Hypothetical protein F31F4.17 [Caenorhabditis elegans] 8.0E-91
blast NP_503283 F31F4.17 [Caenorhabditis elegans] gb|AAG24094.1| Hypothetical protein F31F4.17 [Caenorhabditis elegans] 2.0E-83
blast NP_503601 Y5H2B.1 [Caenorhabditis elegans] gb|AAK84621.1| Hypothetical protein Y5H2B.1 [Caenorhabditis elegans] 9.0E-80
Sequence
Target Sequence 
>C. ELEGANS:184006_AT
atgcgtgaacagttgctcgattttctggatgactcgagtcaagattttgggaacttgcca
agatcgaatcaacgtacccatgtaacctgcgttcatgcccgcagaggtgattttgtggat
gttggctttcaggcagccgacccagattttatccgaaattctgtcaagtatattgcggaa
aattttattccagaaattgaatacaaaaaagtccatcgaaaagttgtaattttcggcgat
gacctggaatttatgagaagcttatttgaaaactctgtggtgtcaactgacgagccagaa
tatatgttcccggcagaatactatatatctcaaaactcaccagccgaagatttgacctac
tcgaaacaaaactgtgatatcgttctgattagtgcgccaaaatctacattcggctggtgg
attgggtatttttcaaaaggaaataaagtattctatcgagatatccgatatgcaaaagat
cggggctatgtaagtactcatatttccaaaactgccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCGTGAACAGTTGCTCGATTTTC 685 41 433 Antisense
GTACCCATGTAACCTGCGTTCATGC 703 457 506 Antisense
CGTTCATGCCCGCAGAGGTGATTTT 518 247 522 Antisense
GATGTTGGCTTTCAGGCAGCCGACC 408 407 550 Antisense
GCCGACCCAGATTTTATCCGAAATT 302 285 568 Antisense
AAAACTCTGTGGTGTCAACTGACGA 284 129 701 Antisense
GACGAGCCAGAATATATGTTCCCGG 465 379 721 Antisense
CTATATATCTCAAAACTCACCAGCC 421 223 753 Antisense
CCAGCCGAAGATTTGACCTACTCGA 418 259 772 Antisense
GATATCGTTCTGATTAGTGCGCCAA 654 425 808 Antisense
GTACTCATATTTCCAAAACTGCCAT 445 459 926 Antisense
Sequence Source Affymetrix Proprietary Database