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[184004_s_at]

Description W03B1.3 /REP_DB=WormBase Gene ID /WP=CE07567 /TR=Q23142 /GB=AAC24438.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 38      4grp_total > 50      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 3.5
(-3)
A 		44.9
(0.8)
A 		69.3
(3)
A 		9.8
(-2.4)
A 		66
B 16.3
(-2.1)
A 		54.2
(3)
A 		9.8
(-3)
A 		19
(-1.8)
A 		44
C 28.3
(-0.3)
A 		59.4
(3)
A 		19.5
(-1.3)
A 		3.3
(-3)
A 		56
avr 16
(-2.2) 		52.8
(3) 		32.9
(0.2) 		10.7
(-3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 100.4
(3)
A 		63.1
(0.6)
A 		8.6
(-3)
A 		36.1
(-1.2)
A 		62.8
(0.5)
A 		72.4
(1.2)
A 		92
B 69.4
(1.3)
A 		55.3
(-0.3)
A 		30.7
(-3)
A 		39.3
(-2)
A 		44.6
(-1.5)
A 		85
(3)
P 		54
C 65.2
(3)
A 		56.5
(1.3)
A 		54.5
(0.9)
A 		39.4
(-2)
A 		34
(-3)
A 		62.2
(2.4)
A 		31
avr 78.3
(3) 		58.3
(0.4) 		31.3
(-3) 		38.3
(-2.1) 		47.1
(-1) 		73.2
(2.3) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 1.3
(-3)
A 		9.7
(-0)
A 		18.1
(3)
A 		1.4
(-3)
A 		17
B 5.2
(-1.4)
A 		13.4
(3)
A 		2.3
(-3)
A 		4
(-2.1)
A 		11
C 9.4
(0.2)
A 		17.1
(3)
A 		6.8
(-0.7)
A 		0.6
(-3)
A 		17
avr 5.3
(-1.3) 		13.4
(3) 		9.1
(0.7) 		2
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 18.5
(1.9)
A 		22.4
(3)
A 		1.9
(-3)
A 		9.1
(-0.9)
A 		19
(2)
A 		17.6
(1.6)
A 		21
B 24.1
(1.1)
A 		18.4
(-0.3)
A 		7.5
(-3)
A 		10.4
(-2.3)
A 		18.1
(-0.4)
A 		31.7
(3)
P 		24
C 24.2
(3)
A 		17.2
(0.4)
A 		13.9
(-0.8)
A 		7.9
(-3)
A 		11
(-1.9)
A 		20.8
(1.7)
A 		16
avr 22.3
(2.6) 		19.3
(1.4) 		7.8
(-3) 		9.1
(-2.5) 		16
(0.2) 		23.4
(3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184004_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11196
Sequence Type Exemplar sequence
Representative Public ID W03B1.3 NCBI
Target Description W03B1.3 /REP_DB=WormBase Gene ID /WP=CE07567 /TR=Q23142 /GB=AAC24438.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068141(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068141 NCBI Caenorhabditis elegans W03B1.3 (W03B1.3) mRNA, complete cds. 11/11 None
SNAP00000035755 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4332749:4333690:-1 11/11 None
GENEFINDER00000035770 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4332749:4333690:-1 11/11 None
W03B1.3.1 ENSEMBL cdna:known chromosome:CEL140:IV:4332712:4335348:-1 gene:W03B1.3 11/11 None
W03B1.3.2 ENSEMBL cdna:known chromosome:CEL140:IV:4332712:4335365:-1 gene:W03B1.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4332754-4334005(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W03B1.3
Entrez Gene 177199 Entrez gene
SwissProt Q23142 EMBL-EBI
WormBase CE07567 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC24438 Hypothetical protein W03B1.3 [Caenorhabditis elegans] ref|NP_500542.1| W03B1.3 [Caenorhabditis elegans] 1.0E-146
blast CAE61110 Hypothetical protein CBG04867 [Caenorhabditis briggsae] 8.0E-92
Sequence
Target Sequence 
>C. ELEGANS:184004_S_AT
tacaagacatgctccgacaagctccatcaggcactattgttcatgctcgtcgagagtcca
gaaatttcaaaggatttggtgactcacttcaaaactgaaccaaattatcgttatgctgga
aaatatctcaaaacttatgaggcaattgcaaataagggacgggataagacaaagtatgag
agcttggagccagcgattagtacgctttctctgttggatgcagaacgcgaatctcgtgtt
cgcaagcagttggacaatttgaagccgctgacaaaattcattggagaagactattgggag
tacgcacggttgaggagagtgtactgggatggcctggaagcctatgacgatgcgctgacc
caacagagcaaagatcgcactgaggaagccgagcgaatcactgtcaacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACAAGACATGCTCCGACAAGCTCC 462 641 127 Antisense
CGACAAGCTCCATCAGGCACTATTG 106 253 141 Antisense
AGGCACTATTGTTCATGCTCGTCGA 485 53 155 Antisense
GCTCGTCGAGAGTCCAGAAATTTCA 651 299 171 Antisense
GAGAGCTTGGAGCCAGCGATTAGTA 687 393 304 Antisense
GATTAGTACGCTTTCTCTGTTGGAT 129 431 321 Antisense
GAATCTCGTGTTCGCAAGCAGTTGG 90 329 355 Antisense
GACTATTGGGAGTACGCACGGTTGA 488 371 415 Antisense
AGTGTACTGGGATGGCCTGGAAGCC 634 57 444 Antisense
GGAAGCCTATGACGATGCGCTGACC 143 531 462 Antisense
GAAGCCGAGCGAATCACTGTCAACG 262 345 511 Antisense
Sequence Source Affymetrix Proprietary Database