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[184001_at]

Description C30B5.7 /REP_DB=WormBase Gene ID /WP=CE02526 /TR=Q18323 /GB=AAK31471.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 14      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 90      6grp_total > 02      4grp_total > 23      6grp_highest_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 228
1 2 3 4 range
A 341.1
(3)
P 		157.2
(-3)
P 		191.7
(-1.9)
P 		296.2
(1.5)
P 		184
B 339.1
(3)
P 		192.7
(-1.6)
P 		147.2
(-3)
P 		219.6
(-0.7)
P 		192
C 272.6
(2.1)
P 		117.6
(-2.9)
P 		113
(-3)
P 		302.2
(3)
P 		189
avr 317.6
(3) 		155.8
(-2.8) 		150.6
(-3) 		272.7
(1.4) 		167

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 152
1 2 3 4 5 6 range
A 234.8
(3)
P 		207
(1.9)
P 		162.5
(0.2)
P 		152.8
(-0.2)
P 		195.8
(1.5)
P 		82.4
(-3)
P 		152
B 221.9
(3)
P 		217.3
(2.7)
P 		163.9
(-0.3)
P 		146.5
(-1.3)
P 		139.8
(-1.7)
P 		116.6
(-3)
P 		105
C 168.3
(-0.5)
P 		229
(3)
P 		137.5
(-2.3)
P 		173.8
(-0.2)
P 		148.4
(-1.7)
P 		126
(-3)
P 		103
avr 208.3
(2.5) 		217.8
(3) 		154.6
(-0.5) 		157.7
(-0.3) 		161.3
(-0.1) 		108.3
(-3) 		110
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 124.2
(3)
P 		34.1
(-3)
P 		50.1
(-1.9)
P 		43.4
(-2.4)
P 		90
B 108.1
(3)
P 		47.6
(-1.9)
P 		34.1
(-3)
P 		46.8
(-2)
P 		74
C 90.2
(3)
P 		33.8
(-3)
P 		39.4
(-2.4)
P 		50.9
(-1.2)
P 		56
avr 107.5
(3) 		38.5
(-3) 		41.2
(-2.8) 		47
(-2.3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 43.3
(-0.4)
P 		73.6
(3)
P 		35.4
(-1.3)
P 		38.8
(-0.9)
P 		59.1
(1.4)
P 		20.1
(-3)
P 		54
B 77.2
(3)
P 		72.3
(2.2)
P 		39.8
(-2.8)
P 		38.8
(-3)
P 		56.8
(-0.2)
P 		43.5
(-2.3)
P 		38
C 62.4
(1.7)
P 		69.9
(3)
P 		35
(-3)
P 		35
(-3)
P 		48
(-0.8)
P 		42.2
(-1.8)
P 		35
avr 61
(1.2) 		71.9
(3) 		36.7
(-2.8) 		37.5
(-2.6) 		54.6
(0.2) 		35.3
(-3) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184001_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4526
Sequence Type Exemplar sequence
Representative Public ID C30B5.7 NCBI
Target Description C30B5.7 /REP_DB=WormBase Gene ID /WP=CE02526 /TR=Q18323 /GB=AAK31471.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062842(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062842 NCBI Caenorhabditis elegans C30B5.7 (C30B5.7) mRNA, complete cds. 11/11 None
SNAP00000017623 ENSEMBL cdna:SNAP chromosome:CEL140:II:6224946:6227044:-1 11/11 None
GENEFINDER00000017630 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6224946:6227044:-1 11/11 None
C30B5.7 ENSEMBL cdna:known chromosome:CEL140:II:6224946:6227044:-1 gene:C30B5.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6224942-6227041(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C30B5.7
Entrez Gene 183043 Entrez gene
SwissProt Q18323 EMBL-EBI
WormBase CE02526 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31471 Hypothetical protein C30B5.7 [Caenorhabditis elegans] ref|NP_495243.1| C30B5.7 [Caenorhabditis elegans] 0.0
blast CAE59267 Hypothetical protein CBG02598 [Caenorhabditis briggsae] 1.0E-179
blast CAE59267 Hypothetical protein CBG02598 [Caenorhabditis briggsae] 1.0E-177
blast CAE59047 Hypothetical protein CBG02329 [Caenorhabditis briggsae] 4.0E-40
blast CAE59047 Hypothetical protein CBG02329 [Caenorhabditis briggsae] 9.0E-40
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495243.1 7 39-61,68-90,127-149,161-183,205-227,248-270,285-304
C30B5.7 7 39-61,68-90,127-149,161-183,205-227,248-270,285-304
SNAP00000017623 7 39-61,68-90,127-149,161-183,205-227,248-270,285-304
GENEFINDER00000017630 7 38-60,73-95,135-157,169-191,213-235,256-278,293-312
Sequence
Target Sequence 
>C. ELEGANS:184001_AT
ttcccaattttctatcgtttttctgtagatggaaaagcagtaaaatatctggttgtccca
ggactaagtcttctctttgtattctgttcgatctgtgtcgcgttttatcttgctttttct
gaaaatcatcttacaagtttctattgcggtagaaaagctgcatttggagaaggatttggt
acattcatttactgttgtaatataacatgcaacgtggcgagtaccatttttgcgacagct
gcatacttcaaagcattgaatctttcaaagacacaaccccgaatgcaaagacaagtgaat
gttatcagatattacttgctcatttctgtgctctcaacgcttttggtgtcacttccaaac
accatcgccttattccaactatacgtagaaaaagtgagtgacagtctttcaaaacctgca
tactggatgcagacaatcaacagtggtattcacttttttgtgtatttggcactgaacaaa
gagttccgagcgagaacttttcgaatgttcaaaatggttcattccgaagaaatgtcactg
tcgaagaaacaatctccagacggatgtgaaactcctctccgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCCAATTTTCTATCGTTTTTCTG 665 697 448 Antisense
GGTTGTCCCAGGACTAAGTCTTCTC 111 509 498 Antisense
AAGTCTTCTCTTTGTATTCTGTTCG 44 159 513 Antisense
ATTCTGTTCGATCTGTGTCGCGTTT 521 9 528 Antisense
TGTCGCGTTTTATCTTGCTTTTTCT 669 557 543 Antisense
TGGCGAGTACCATTTTTGCGACAGC 422 541 662 Antisense
TATTACTTGCTCATTTCTGTGCTCT 583 663 757 Antisense
GTGCTCTCAACGCTTTTGGTGTCAC 440 479 775 Antisense
CATCGCCTTATTCCAACTATACGTA 48 211 810 Antisense
GACAGTCTTTCAAAACCTGCATACT 305 369 847 Antisense
GACGGATGTGAAACTCCTCTCCGTG 478 375 1006 Antisense
Sequence Source Affymetrix Proprietary Database