[Home] | [Total List]

[183999_s_at]

Description Y49E10.8 /REP_DB=WormBase Gene ID /WP=CE24392 /TR=Q9U279 /GB=CAB11561.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 22      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.3
(-3)
A 		0.8
(-2.4)
A 		3.9
(1.2)
A 		5.4
(3)
A 		5
B 1.9
(2)
A 		0.9
(-1.3)
A 		0.4
(-3)
A 		2.2
(3)
A 		2
C 9
(3)
A 		3.6
(-1.1)
A 		1
(-3)
A 		3.5
(-1.1)
A 		8
avr 3.7
(3) 		1.8
(-3) 		1.8
(-3) 		3.7
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 1
(-3)
A 		0.9
(-3)
A 		1.4
(-2.8)
A 		3
(-2.2)
A 		2.7
(-2.3)
A 		16.8
(3)
A 		16
B 19.2
(1.2)
A 		1.3
(-2.9)
A 		26.9
(3)
A 		0.8
(-3)
A 		1.6
(-2.8)
A 		1.9
(-2.7)
A 		26
C 1.3
(-3)
A 		3.3
(-0.4)
A 		5.9
(3)
A 		1.3
(-3)
A 		1.5
(-2.7)
A 		2.6
(-1.3)
A 		5
avr 7.2
(0.4) 		1.8
(-2.9) 		11.4
(3) 		1.7
(-3) 		1.9
(-2.9) 		7.1
(0.3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 0.1
(-3)
A 		0.2
(-2.3)
A 		1
(3)
A 		0.8
(1.7)
A 		1
B 0.6
(3)
A 		0.2
(-1.8)
A 		0.1
(-3)
A 		0.5
(1.8)
A 		1
C 3
(3)
A 		1
(-1.4)
A 		0.3
(-3)
A 		0.6
(-2.3)
A 		3
avr 1.2
(3) 		0.5
(-3) 		0.5
(-3) 		0.6
(-2.1) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.2
(-3)
A 		0.3
(-2.8)
A 		0.3
(-2.8)
A 		0.8
(-2.1)
A 		0.8
(-2.1)
A 		4.1
(3)
A 		4
B 6.7
(3)
A 		0.4
(-2.8)
A 		6.5
(2.8)
A 		0.2
(-3)
A 		0.7
(-2.5)
A 		0.7
(-2.5)
A 		7
C 0.5
(-2)
A 		1
(0.5)
A 		1.5
(3)
A 		0.3
(-3)
A 		0.5
(-2)
A 		0.9
(0)
A 		1
avr 2.5
(2.3) 		0.6
(-2.5) 		2.8
(3) 		0.4
(-3) 		0.7
(-2.3) 		1.9
(0.8) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183999_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6917
Sequence Type Exemplar sequence
Representative Public ID Y49E10.8 NCBI
Target Description Y49E10.8 /REP_DB=WormBase Gene ID /WP=CE24392 /TR=Q9U279 /GB=CAB11561.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070266(11), NM_070237(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070266 NCBI Caenorhabditis elegans B0513.6 (B0513.6) mRNA, complete cds. 11/11 A 
NM_070237 NCBI Caenorhabditis elegans Y45F10C.1 (Y45F10C.1) mRNA, complete cds. 11/11 A 
GENEFINDER00000016111 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12387630:12390431:1 11/11 None
SNAP00000016075 ENSEMBL cdna:SNAP chromosome:CEL140:III:12387775:12390431:1 11/11 None
SNAP00000026157 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13854324:13857320:1 11/11 None
GENEFINDER00000026169 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13854324:13857320:1 11/11 None
SNAP00000031584 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13656382:13659516:-1 11/11 None
GENEFINDER00000031588 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13656382:13659516:-1 11/11 None
Y49E10.8 ENSEMBL cdna:pseudogene chromosome:CEL140:III:12389760:12390431:1 gene:Y49E10.8 11/11 None
Y45F10C.1 ENSEMBL cdna:known chromosome:CEL140:IV:13656382:13659516:-1 gene:Y45F10C.1 11/11 A 
B0513.6 ENSEMBL cdna:known chromosome:CEL140:IV:13854324:13857320:1 gene:B0513.6 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000016114 1/11 Cross Hyb Matching Probes None
SNAP00000016072 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13856700-13857326(+) 72.61 72.61
chrIII:12389527-12390427(+) 90.46 100.0
chrIV:13656387-13657013(-) 72.61 72.61
Public Domain and Genome References
Gene Title

Ensembl Y49E10.8
Y45F10C.1
B0513.6
Entrez Gene 182019 Entrez gene
189922 Entrez gene
SwissProt O45229 EMBL-EBI
O45943 EMBL-EBI
WormBase CE15562 Wormbase
CE16635 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05118 Hypothetical protein B0513.6 [Caenorhabditis elegans] ref|NP_502667.1| B0513.6 [Caenorhabditis elegans] 0.0
blast CAB16477 Hypothetical protein Y45F10C.1 [Caenorhabditis elegans] ref|NP_502638.1| Y45F10C.1 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006570 EMBL-EBI SPK 4.9E-52
Pfam IPR006570 EMBL-EBI SPK 1.3E-59
Pfam IPR006570 EMBL-EBI SPK 2.7E-52
Pfam IPR006570 EMBL-EBI SPK 1.0E-44
Pfam IPR006570 EMBL-EBI SPK 9.7E-11
Pfam IPR006570 EMBL-EBI SPK 6.9E-11
Pfam IPR006570 EMBL-EBI SPK 4.6E-11
Pfam IPR006570 EMBL-EBI SPK 1.9E-11
Sequence
Target Sequence 
>C. ELEGANS:183999_S_AT
aagtgcgccgaaattagagatcgttgatgagcccaaagtacagtgtgatgcagtcaacaa
taacaaggcacaagaagctgatgtggaaggatctgaatatgcgaagatctcgatgctcaa
tgtactcgacaagctggacaatatgctcatttctcttgaatcggaacttttaaatgagtt
gctaaatgagattgaacaacttcgcgttggaccggcgaataagatgattccgttgaaact
attcatcaatgccatggagtcgatgttgcagaatatcactggaaagttccaaacgaaaga
tgcagataggagtacaccagcaaaagattttttgaagacttttaagcttcttttgaaatg
gttgaaggttccgttgcttgccagtttgctgaaaaaagtcgaggaagaaattgacaaact
cggagacattgaacaagtaatcttgataaaatataatgtcatgatcggtgatgttaacca
ac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTGCGCCGAAATTAGAGATCGTT 13 159 213 Antisense
AAGTACAGTGTGATGCAGTCAACAA 417 157 248 Antisense
GCAGTCAACAATAACAAGGCACAAG 20 313 262 Antisense
CGAAGATCTCGATGCTCAATGTACT 291 253 314 Antisense
TCATTTCTCTTGAATCGGAACTTTT 291 619 359 Antisense
TTGAACAACTTCGCGTTGGACCGGC 567 521 404 Antisense
GATTCCGTTGAAACTATTCATCAAT 422 433 438 Antisense
TATTCATCAATGCCATGGAGTCGAT 660 663 452 Antisense
GGAGTCGATGTTGCAGAATATCACT 382 517 468 Antisense
GGAGTACACCAGCAAAAGATTTTTT 351 517 521 Antisense
GTCATGATCGGTGATGTTAACCAAC 696 459 670 Antisense
Sequence Source Affymetrix Proprietary Database