[Home] | [Total List]

[183998_at]

Description R11F4.2 /REP_DB=WormBase Gene ID /WP=CE04829 /TR=Q21943 /GB=AAA79750.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 14      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 363
1 2 3 4 range
A 236.9
(2.4)
P 		16.3
(-3)
A 		78.1
(-1.5)
A 		261.9
(3)
P 		246
B 223.7
(0.1)
P 		91.3
(-2.4)
A 		56.9
(-3)
A 		379.5
(3)
P 		323
C 207.1
(1.4)
P 		66.3
(-2.5)
A 		49.3
(-3)
A 		264.8
(3)
P 		216
avr 222.6
(1) 		58
(-3) 		61.4
(-2.9) 		302.1
(3) 		244

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 118
1 2 3 4 5 6 range
A 135.1
(-1.1)
A 		212.2
(3)
A 		99.8
(-3)
P 		139.5
(-0.9)
A 		133.1
(-1.2)
M 		153.9
(-0.1)
P 		112
B 171.3
(3)
M 		151.1
(1.4)
A 		108.3
(-1.9)
A 		103.5
(-2.3)
A 		107.9
(-1.9)
A 		94.1
(-3)
A 		77
C 136.5
(1.7)
P 		144
(3)
A 		113.1
(-2.4)
A 		115.7
(-2)
A 		109.9
(-3)
A 		112.9
(-2.5)
P 		34
avr 147.6
(0.9) 		169.1
(3) 		107.1
(-3) 		119.6
(-1.8) 		117
(-2) 		120.3
(-1.7) 		62
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 86.3
(3)
P 		3.5
(-3)
A 		20.4
(-1.8)
A 		38.3
(-0.5)
P 		83
B 71.3
(2.1)
P 		22.6
(-2.2)
A 		13.2
(-3)
A 		80.9
(3)
P 		68
C 68.6
(3)
P 		19.1
(-2.8)
A 		17.2
(-3)
A 		44.6
(0.2)
P 		51
avr 75.4
(3) 		15.1
(-3) 		16.9
(-2.8) 		54.6
(0.9) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 24.9
(-2.6)
A 		75.5
(3)
A 		21.7
(-3)
P 		35.4
(-1.5)
A 		40.2
(-0.9)
M 		37.5
(-1.2)
P 		54
B 59.6
(3)
M 		50.3
(1.3)
A 		26.3
(-3)
A 		27.4
(-2.8)
A 		43.8
(0.2)
A 		35.1
(-1.4)
A 		33
C 50.6
(3)
P 		43.9
(1.5)
A 		28.8
(-1.8)
A 		23.3
(-3)
A 		35.6
(-0.3)
A 		37.8
(0.2)
P 		27
avr 45
(0.8) 		56.6
(3) 		25.6
(-3) 		28.7
(-2.4) 		39.9
(-0.2) 		36.8
(-0.8) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183998_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4518
Sequence Type Exemplar sequence
Representative Public ID R11F4.2 NCBI
Target Description R11F4.2 /REP_DB=WormBase Gene ID /WP=CE04829 /TR=Q21943 /GB=AAA79750.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027111, NM_001027112
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000009531 ENSEMBL cdna:SNAP chromosome:CEL140:II:4080404:4086135:1 11/11 None
GENEFINDER00000009536 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4083063:4086135:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001027112 8/11 Cross Hyb Matching Probes None
NM_001027111 4/11 Cross Hyb Matching Probes None
R11F4.2a 4/11 Cross Hyb Matching Probes None
R11F4.2b 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4083085-4086134(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE71522 Hypothetical protein CBG18457 [Caenorhabditis briggsae] 0.0
blast AAA79750 Hypothetical protein R11F4.2a [Caenorhabditis elegans] ref|NP_001022282.1| R11F4.2a [Caenorhabditis elegans] 0.0
blast AAR12974 Hypothetical protein R11F4.2b [Caenorhabditis elegans] ref|NP_001022283.1| R11F4.2b [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000009531 7 45-67,79-101,121-143,164-182,219-241,271-293,313-335
GENEFINDER00000009536 7 22-44,56-78,98-120,141-159,196-218,248-270,290-312
Sequence
Target Sequence 
>C. ELEGANS:183998_AT
atgtatcgttttctcgtatcttctcgcgaatattctaaacgtcggtgtcacactgtggga
gtacgtggcatttcaatcaacacaaaccggagacgcttatgcgttctacgaaacttgcac
cgatgtgacgtcagtactctacattctggtgtgtgccacgcgtctttttgtatattattt
gttcaatcaggaaatccgcgaagccatcaaacctctcgtctgccacagcacgagtgctcc
tcgcaagcaggactatgttacagtaacccgaagcttacaatccatgccgttggcggtagt
gggcgccctaacattcctcggtccaagacagaccggcatcgtgagaaatcagcaaaacga
ctcctcccgccaaatcggaaccgaaatcgatgctgtagcaattgccattgctcgaaggct
gctctcgagtgagctcgtcttcggaggtggaggcaccaaagaggccaacgactcatacgt
catctcaaaccaccacgcgaccacatctggagacgagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTATCGTTTTCTCGTATCTTCTC 597 47 741 Antisense
GCACCGATGTGACGTCAGTACTCTA 95 315 857 Antisense
GTACTCTACATTCTGGTGTGTGCCA 501 459 874 Antisense
GTGCTCCTCGCAAGCAGGACTATGT 327 479 974 Antisense
ACCCGAAGCTTACAATCCATGCCGT 187 87 1006 Antisense
CCATGCCGTTGGCGGTAGTGGGCGC 515 269 1022 Antisense
CTAACATTCCTCGGTCCAAGACAGA 467 227 1048 Antisense
ATTGCCATTGCTCGAAGGCTGCTCT 693 5 1141 Antisense
CTCTCGAGTGAGCTCGTCTTCGGAG 590 229 1162 Antisense
AGAGGCCAACGACTCATACGTCATC 180 69 1200 Antisense
CACGCGACCACATCTGGAGACGAGG 540 199 1234 Antisense
Sequence Source Affymetrix Proprietary Database