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[183996_s_at]

Description F59A3.9 /REP_DB=WormBase Gene ID /WP=CE11432 /TR=P91361 /GB=AAB37823.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 58      6grp_total > 59      4grp_total > 22      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 91.8
(3)
P 		70.9
(0.6)
A 		40.1
(-3)
A 		86.7
(2.4)
P 		52
B 94.6
(3)
P 		78.8
(0.1)
A 		62
(-3)
A 		65.3
(-2.4)
P 		33
C 92.7
(0.7)
P 		10.2
(-3)
A 		14.9
(-2.8)
A 		145.3
(3)
P 		135
avr 93
(2.4) 		53.3
(-1.6) 		39
(-3) 		99.1
(3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 124.4
(3)
P 		75.6
(-1.4)
M 		58.2
(-3)
P 		62.6
(-2.6)
A 		70.6
(-1.9)
A 		99.8
(0.8)
P 		66
B 76.2
(-1.5)
P 		66.3
(-2.4)
P 		62.8
(-2.7)
P 		58.9
(-3)
P 		98
(0.4)
P 		127.4
(3)
P 		69
C 57.4
(-0.7)
P 		84
(1.2)
P 		25.5
(-3)
A 		84.8
(1.2)
A 		57.6
(-0.7)
P 		109.3
(3)
P 		84
avr 86
(0.5) 		75.3
(-0.5) 		48.8
(-3) 		68.8
(-1.1) 		75.4
(-0.5) 		112.2
(3) 		63
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 33.4
(3)
P 		15.4
(-1.7)
A 		10.5
(-3)
A 		12.7
(-2.4)
P 		23
B 30.2
(3)
P 		19.5
(-0.9)
A 		14.4
(-2.8)
A 		13.9
(-3)
P 		16
C 30.7
(3)
P 		2.9
(-3)
A 		5.2
(-2.5)
A 		24.5
(1.7)
P 		28
avr 31.4
(3) 		12.6
(-2.3) 		10
(-3) 		17
(-1) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 22.9
(1.3)
P 		26.9
(3)
M 		12.7
(-3)
P 		15.9
(-1.6)
A 		21.3
(0.6)
A 		24.3
(1.9)
P 		14
B 26.5
(-0.9)
P 		22.1
(-1.7)
P 		15.3
(-3)
P 		15.6
(-2.9)
P 		39.8
(1.6)
P 		47.5
(3)
P 		32
C 21.3
(-0)
P 		25.6
(0.8)
P 		6.5
(-3)
A 		17.1
(-0.9)
A 		18.6
(-0.6)
P 		36.6
(3)
P 		30
avr 23.6
(-0) 		24.9
(0.3) 		11.5
(-3) 		16.2
(-1.9) 		26.6
(0.7) 		36.1
(3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183996_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.427
Sequence Type Exemplar sequence
Representative Public ID F59A3.9 NCBI
Target Description F59A3.9 /REP_DB=WormBase Gene ID /WP=CE11432 /TR=P91361 /GB=AAB37823.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059220(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059220 NCBI Caenorhabditis elegans F59A3.9 (F59A3.9) mRNA, complete cds. 11/11 None
GENEFINDER00000013459 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5530242:5533713:-1 10/11 None
SNAP00000013451 ENSEMBL cdna:SNAP chromosome:CEL140:I:5530764:5533713:-1 11/11 None
F59A3.9 ENSEMBL cdna:known chromosome:CEL140:I:5530686:5533713:-1 gene:F59A3.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5530763-5533713(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F59A3.9
Entrez Gene 172207 Entrez gene
SwissProt P91361 EMBL-EBI
WormBase CE11432 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37823 Hypothetical protein F59A3.9 [Caenorhabditis elegans] ref|NP_491621.1| F59A3.9 [Caenorhabditis elegans] 0.0
blast CAE67079 Hypothetical protein CBG12488 [Caenorhabditis briggsae] 1.0E-102
blast XP_636183 hypothetical protein DDB0219440 [Dictyostelium discoideum] gb|EAL62696.1| hypothetical protein DDB0219440 [Dictyostelium discoideum] 2.0E-20
Protein Domains
Database ID Description E-Value
Pfam IPR002058 EMBL-EBI PAP/25A-associated domain 3.1E-18
Sequence
Target Sequence 
>C. ELEGANS:183996_S_AT
gcagtctagctgtgcttttcattggattcatgaagtattactcagagttcaatttcaaat
ggaattggatctcgattaaacatggaaacgtgttgaaaaagaaatggtcaaagacaagag
ttccaaaaaatggaatgccaaaggattgccgttttattgtcgtcgcggatccattgttgg
aaattccgagaaactgtgctggaaccgtccgtcagcagaactacatggaaagaattcaac
tcgagtttagagaggagtacgagcgaattctgaagagaaagacaattttcaatctttacc
aatgcaattggagtagaaaattgagaaaagagggaatggaacgagatcttcaaattatga
ttcttcaagatgagcttcgcaaattaagaattgctaatttgccgactgaagaagaagttc
catggggtacagtcgttgatttcacaagtcctcgaaccttttcacctacaaatcaacacc
caaaggtcttctggtgttcagaacaaacgactgaaaatcaaagaagagataatttatggc
ctgagctacttcgtaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGTCTAGCTGTGCTTTTCATTGG 551 311 872 Antisense
AGGATTGCCGTTTTATTGTCGTCGC 304 55 1013 Antisense
CCGAGAAACTGTGCTGGAACCGTCC 460 261 1057 Antisense
CCGTCCGTCAGCAGAACTACATGGA 437 265 1076 Antisense
GACAATTTTCAATCTTTACCAATGC 564 363 1152 Antisense
GAATTGCTAATTTGCCGACTGAAGA 593 323 1259 Antisense
GAAGTTCCATGGGGTACAGTCGTTG 492 335 1285 Antisense
TTTCACAAGTCCTCGAACCTTTTCA 249 649 1311 Antisense
GAACCTTTTCACCTACAAATCAACA 510 345 1325 Antisense
AATCAACACCCAAAGGTCTTCTGGT 523 171 1342 Antisense
TTTATGGCCTGAGCTACTTCGTACA 374 663 1404 Antisense
Sequence Source Affymetrix Proprietary Database