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[183993_at]

Description C16C4.5 /REP_DB=WormBase Gene ID /WP=CE08201 /TR=O16551 /GB=AAB93651.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 43      4grp_high_8_8 > 38      6grp_total > 30      4grp_total > 41      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 20.3
(-3)
A 		85
(3)
P 		56.6
(0.4)
P 		55
(0.2)
P 		65
B 26.5
(-3)
A 		76.3
(2.6)
P 		80.2
(3)
P 		65.6
(1.4)
P 		54
C 25.9
(-3)
P 		76.9
(2)
P 		87.7
(3)
P 		42.6
(-1.4)
A 		62
avr 24.2
(-3) 		79.4
(3) 		74.8
(2.5) 		54.4
(0.3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 125
1 2 3 4 5 6 range
A 81.6
(1)
P 		88.7
(1.5)
P 		86
(1.3)
P 		110.6
(3)
P 		40.1
(-2)
M 		25.7
(-3)
A 		85
B 55.4
(-2.3)
P 		151.1
(3)
P 		129.2
(1.8)
P 		82.1
(-0.8)
P 		47.1
(-2.8)
P 		43.3
(-3)
P 		108
C 60.9
(-1.8)
P 		148.2
(3)
P 		105.9
(0.7)
P 		118.6
(1.4)
P 		53.6
(-2.2)
P 		39.1
(-3)
P 		109
avr 66
(-1.1) 		129.3
(3) 		107
(1.6) 		103.8
(1.4) 		46.9
(-2.3) 		36
(-3) 		93
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 7.4
(-3)
A 		18.4
(3)
P 		14.8
(1)
P 		8.1
(-2.6)
P 		11
B 8.5
(-3)
A 		18.8
(3)
P 		18.6
(2.9)
P 		14
(0.2)
P 		10
C 8.6
(-2.6)
P 		22.1
(0.8)
P 		30.6
(3)
P 		7.2
(-3)
A 		23
avr 8.2
(-3) 		19.8
(2.3) 		21.3
(3) 		9.8
(-2.3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 15
(-0.9)
P 		31.6
(3)
P 		18.7
(-0.1)
P 		28
(2.1)
P 		12.1
(-1.6)
M 		6.3
(-3)
A 		25
B 19.3
(-2.5)
P 		50.3
(3)
P 		31.4
(-0.3)
P 		21.7
(-2)
P 		19.2
(-2.5)
P 		16.2
(-3)
P 		34
C 22.6
(-1.2)
P 		45.2
(3)
P 		26.9
(-0.4)
P 		23.9
(-1)
P 		17.4
(-2.2)
P 		13.1
(-3)
P 		32
avr 19
(-1.6) 		42.4
(3) 		25.7
(-0.3) 		24.5
(-0.5) 		16.2
(-2.2) 		11.9
(-3) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183993_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4457
Sequence Type Exemplar sequence
Representative Public ID C16C4.5 NCBI
Target Description C16C4.5 /REP_DB=WormBase Gene ID /WP=CE08201 /TR=O16551 /GB=AAB93651.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061700(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061700 NCBI Caenorhabditis elegans C16C4.5 (C16C4.5) mRNA, complete cds. 11/11 None
SNAP00000026897 ENSEMBL cdna:SNAP chromosome:CEL140:II:1866394:1867785:1 11/11 None
GENEFINDER00000026919 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1866394:1867785:1 11/11 None
C16C4.5 ENSEMBL cdna:known chromosome:CEL140:II:1866143:1867785:1 gene:C16C4.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1866141-1867784(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C16C4.5
Entrez Gene 182659 Entrez gene
SwissProt O16551 EMBL-EBI
WormBase CE08201 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB93651 Hypothetical protein C16C4.5 [Caenorhabditis elegans] ref|NP_494101.1| C16C4.5 [Caenorhabditis elegans] 0.0
blast AAB93651 Hypothetical protein C16C4.5 [Caenorhabditis elegans] ref|NP_494101.1| C16C4.5 [Caenorhabditis elegans] 1.0E-173
blast AAB93655 Hypothetical protein C16C4.10 [Caenorhabditis elegans] ref|NP_494108.1| C16C4.10 [Caenorhabditis elegans] 1.0E-105
blast AAC26317 Hypothetical protein T08E11.4 [Caenorhabditis elegans] ref|NP_494086.2| T08E11.4 [Caenorhabditis elegans] 1.0E-104
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 3.8E-52
Pfam IPR002083 EMBL-EBI MATH 1.2E-51
Pfam IPR002083 EMBL-EBI MATH 3.8E-52
Pfam IPR002083 EMBL-EBI MATH 1.2E-51
Sequence
Target Sequence 
>C. ELEGANS:183993_AT
ggatgggagtttgtcagttggaaagaattggagagtgaatatgtggttgatgatagtatt
gtagttgaagctcatgtcaaaatagttaaaatgacggactctccgtacgctgaagacaca
aatcagaaaacatttctattgaatcacactgttaaaaatgttttgagtattaaagaagga
ggcaaatattccaccaaaacagagaaacgattcaatattccatggagattagagattaaa
agacagaatggattttttggattatatctccagtgtgataaaaaactgtgcaaaaggaga
agctggacaattgaagtaaaggatgatctaagattgttgtctcaaaatggacagagcttg
aatctcactagcacatcaattttcgaagagccttctggttacggctatggtaaactcata
agatgggatgatatgctagagaagtatatggtgaacgacagtatcattattgaagctcgt
gttaagataaccaaaacgattggatgtgaagatgaaacaagtattgatgatttggatgat
gaattctctgactgtgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATGGGAGTTTGTCAGTTGGAAAG 431 513 463 Antisense
AAAATGACGGACTCTCCGTACGCTG 25 131 550 Antisense
ACTCTCCGTACGCTGAAGACACAAA 506 99 560 Antisense
GAGGCAAATATTCCACCAAAACAGA 372 403 641 Antisense
TTGGATTATATCTCCAGTGTGATAA 265 709 719 Antisense
GATGATCTAAGATTGTTGTCTCAAA 130 411 784 Antisense
GGACAGAGCTTGAATCTCACTAGCA 671 525 811 Antisense
GAATCTCACTAGCACATCAATTTTC 75 327 822 Antisense
GCACATCAATTTTCGAAGAGCCTTC 11 317 833 Antisense
AGAGCCTTCTGGTTACGGCTATGGT 73 69 849 Antisense
GGATGATGAATTCTCTGACTGTGTG 665 513 996 Antisense
Sequence Source Affymetrix Proprietary Database