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[183992_at]

Description B0432.2 /REP_DB=WormBase Gene ID /WP=CE07740 /TR=P90994 /GB=AAB37889.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 58      6grp_high1_10_10 > 84      4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_highest_nonorm > 65      6grp_total > 74      4grp_total > 17      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 735
1 2 3 4 range
A 672.3
(-3)
P 		778.9
(-2)
P 		812
(-1.7)
P 		1325.6
(3)
P 		653
B 634.7
(-3)
P 		926.7
(-0.6)
P 		945
(-0.5)
P 		1370
(3)
P 		735
C 840.4
(-3)
P 		1238.3
(3)
P 		895
(-2.2)
P 		1147.3
(1.6)
P 		398
avr 715.8
(-3) 		981.3
(-0.2) 		884
(-1.2) 		1281
(3) 		565

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 609
1 2 3 4 5 6 range
A 955.6
(-0.4)
P 		735.3
(-3)
P 		1122.4
(1.6)
P 		1135.7
(1.7)
P 		1242.3
(3)
P 		1178.1
(2.2)
P 		507
B 898.6
(-1)
P 		737.3
(-3)
P 		1221.2
(3)
P 		1124.4
(1.8)
P 		1091.4
(1.4)
P 		1129.3
(1.9)
P 		484
C 709.8
(-3)
P 		794.3
(-2.2)
P 		1082.4
(0.7)
P 		1220.8
(2)
P 		1260.9
(2.4)
P 		1318.4
(3)
P 		609
avr 854.7
(-1.7) 		755.6
(-3) 		1142
(2.1) 		1160.3
(2.4) 		1198.2
(2.9) 		1208.6
(3) 		453
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 187
1 2 3 4 range
A 244.8
(3)
P 		169.1
(-3)
P 		212.3
(0.4)
P 		194
(-1)
P 		76
B 202.4
(-3)
P 		228.9
(-1.2)
P 		219
(-1.9)
P 		291.9
(3)
P 		90
C 278.2
(0.1)
P 		356
(3)
P 		311.9
(1.4)
P 		193.5
(-3)
P 		163
avr 241.8
(0.7) 		251.3
(3) 		247.7
(2.1) 		226.5
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 267
1 2 3 4 5 6 range
A 176.2
(-3)
P 		261.5
(-0.4)
P 		244.4
(-0.9)
P 		288
(0.4)
P 		374.9
(3)
P 		286.8
(0.3)
P 		199
B 312.7
(-1)
P 		245.4
(-3)
P 		296.5
(-1.5)
P 		297.8
(-1.4)
P 		443.4
(3)
P 		421.1
(2.3)
P 		198
C 263.1
(-2.4)
P 		242.4
(-3)
P 		275.5
(-2)
P 		245.5
(-2.9)
P 		408
(2)
P 		441.3
(3)
P 		199
avr 250.7
(-3) 		249.8
(-3) 		272.1
(-2.2) 		277.1
(-2) 		408.8
(3) 		383.1
(2) 		159
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183992_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4763
Sequence Type Exemplar sequence
Representative Public ID B0432.2 NCBI
Target Description B0432.2 /REP_DB=WormBase Gene ID /WP=CE07740 /TR=P90994 /GB=AAB37889.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061295(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061295 NCBI Caenorhabditis elegans B0432.2 (B0432.2) mRNA, complete cds. 11/11 None
SNAP00000033640 ENSEMBL cdna:SNAP chromosome:CEL140:II:290608:291730:1 11/11 None
GENEFINDER00000033646 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:290608:291730:1 11/11 None
B0432.2 ENSEMBL cdna:known chromosome:CEL140:II:290580:291788:1 gene:B0432.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:290607-291730(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0432.2
Entrez Gene 173416 Entrez gene
SwissProt P90994 EMBL-EBI
WormBase CE07740 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1602065_AT similar to DJ-1 protein cfa
CANINE:1585089_AT similar to DJ-1 protein cfa
CANINE_2:CFAAFFX.30092.1.S1_S_AT similar to DJ-1 protein cfa
DROSOPHILA_2:1633817_AT dm
DROSGENOME1:147177_AT dm
CHICKEN:GGA.3836.1.S1_AT Parkinson disease (autosomal recessive, early onset) 7 gga
PLASMODIUM_ANOPHELES:200006_AT Parkinson disease (autosomal recessive, early onset) 7 hs
HG-FOCUS:200006_AT Parkinson disease (autosomal recessive, early onset) 7 hs
HG-U133A:200006_AT Parkinson disease (autosomal recessive, early onset) 7 hs
HG-U133_PLUS_2:200006_AT Parkinson disease (autosomal recessive, early onset) 7 hs
HG-U133B:200006_AT Parkinson disease (autosomal recessive, early onset) 7 hs
HG-U133A_2:200006_AT Parkinson disease (autosomal recessive, early onset) 7 hs
U133_X3P:200006_AT Parkinson disease (autosomal recessive, early onset) 7 hs
HUGENEFL:D61380_AT Parkinson disease (autosomal recessive, early onset) 7 hs
U133_X3P:G6005748_3P_AT Parkinson disease (autosomal recessive, early onset) 7 hs
HG-U95AV2:38974_AT Parkinson disease (autosomal recessive, early onset) 7 hs
MU11KSUBB:W45916_S_AT Parkinson disease (autosomal recessive, early onset) 7 mm
MG-U74AV2:95491_AT Parkinson disease (autosomal recessive, early onset) 7 mm
MOE430A:1456194_A_AT Parkinson disease (autosomal recessive, early onset) 7 mm
MOUSE430A_2:1456194_A_AT Parkinson disease (autosomal recessive, early onset) 7 mm
MOUSE430_2:1456194_A_AT Parkinson disease (autosomal recessive, early onset) 7 mm
MOE430A:1416526_A_AT Parkinson disease (autosomal recessive, early onset) 7 mm
MOUSE430A_2:1416526_A_AT Parkinson disease (autosomal recessive, early onset) 7 mm
MOUSE430_2:1416526_A_AT Parkinson disease (autosomal recessive, early onset) 7 mm
MU19KSUBB:TC34760_AT Parkinson disease (autosomal recessive, early onset) 7, mRNA (cDNA clone MGC:7381 IMAGE:3487763) mm
MU19KSUBB:TC34760_G_AT Parkinson disease (autosomal recessive, early onset) 7, mRNA (cDNA clone MGC:7381 IMAGE:3487763) mm
MU19KSUBC:TC41587_I_AT Parkinson disease (autosomal recessive, early onset) 7, mRNA (cDNA clone MGC:7381 IMAGE:3487763) mm
RG-U34A:AJ007291_AT fertility protein SP22 rn
RG-U34A:AJ007291_G_AT fertility protein SP22 rn
RAE230A:1368653_A_AT fertility protein SP22 rn
RAT230_2:1368653_A_AT fertility protein SP22 rn
Protein Similarities
Method ID Description E-Value
blast AAB37889 Hypothetical protein B0432.2 [Caenorhabditis elegans] ref|NP_493696.1| B0432.2 [Caenorhabditis elegans] 2.0E-89
blast CAE62837 Hypothetical protein CBG07016 [Caenorhabditis briggsae] 2.0E-64
blast AAK18904 Hypothetical protein C49G7.11 [Caenorhabditis elegans] ref|NP_504132.1| C49G7.11 [Caenorhabditis elegans] 8.0E-53
Protein Domains
Database ID Description E-Value
Pfam IPR002818 EMBL-EBI ThiJ/PfpI 3.5E-50
Sequence
Target Sequence 
>C. ELEGANS:183992_AT
gatgtacttgctcgtggtgaaattcgtgtggtttatgccggattagatggagccgaaccg
gtaaaatgtgctcgcggagcccacatcgtgccagacgtcaaactcgaagacgtggaaacc
gaaaaattcgatattgtgattcttccaggcggccaaccgggcagcaacacgttggctgaa
agcctacttgtccgcgatgttctcaagagccaagtagagtctggtgggctgattggagca
atttgtgcagctccaattgcactcttgagccatggagtcaaggcagaacttgtgacaagt
catccaagtgttaaggagaaactcgagaaaggaggctacaagtactcggaggatcgtgtt
gttgtcagtggcaaaatcatcacctctcgtggacccggaactgccttcgaatttgcgctg
aaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGTACTTGCTCGTGGTGAAATTC 97 409 85 Antisense
AAATTCGTGTGGTTTATGCCGGATT 626 113 104 Antisense
ACATCGTGCCAGACGTCAAACTCGA 702 105 167 Antisense
CAACCGGGCAGCAACACGTTGGCTG 298 187 238 Antisense
TTGGCTGAAAGCCTACTTGTCCGCG 172 709 256 Antisense
GTCCGCGATGTTCTCAAGAGCCAAG 527 475 274 Antisense
GTAGAGTCTGGTGGGCTGATTGGAG 380 455 298 Antisense
CTCCAATTGCACTCTTGAGCCATGG 72 235 335 Antisense
GGAGGATCGTGTTGTTGTCAGTGGC 173 517 432 Antisense
TGGCAAAATCATCACCTCTCGTGGA 231 545 453 Antisense
AACTGCCTTCGAATTTGCGCTGAAA 648 141 483 Antisense
Sequence Source Affymetrix Proprietary Database