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[183991_at]

Description B0511.5 /REP_DB=WormBase Gene ID /WP=CE17344 /TR=O61816 /GB=AAC17653.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 92      4grp_highest_8_8 > 22      4grp_high_8_8 > 06      6grp_highest_nonorm > 93      6grp_total > 94      4grp_total > 02      6grp_high1_sub > 04_05      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4833
1 2 3 4 range
A 268.5
(-3)
P 		386.3
(-2.9)
P 		396.3
(-2.8)
P 		5101.1
(3)
P 		4833
B 277.7
(-3)
P 		394.6
(-2.9)
P 		516.5
(-2.7)
P 		5002.8
(3)
P 		4725
C 284.6
(-3)
P 		380.1
(-2.9)
P 		431.6
(-2.8)
P 		4681.1
(3)
P 		4397
avr 276.9
(-3) 		387
(-2.9) 		448.1
(-2.8) 		4928.3
(3) 		4651

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 656
1 2 3 4 5 6 range
A 312.4
(-2.8)
P 		290.4
(-3)
P 		307.9
(-2.8)
P 		652.4
(0.7)
P 		875.3
(3)
P 		603.6
(0.2)
P 		585
B 289.6
(-2.5)
P 		237.9
(-3)
P 		276.4
(-2.6)
P 		565.3
(-0)
P 		893.5
(3)
P 		498.6
(-0.6)
P 		656
C 280.3
(-2.6)
P 		259.4
(-2.8)
P 		241.9
(-3)
P 		558.9
(0.5)
P 		779.5
(3)
P 		532.4
(0.2)
P 		538
avr 294.1
(-2.7) 		262.6
(-3) 		275.4
(-2.9) 		592.2
(0.4) 		849.4
(3) 		544.9
(-0.1) 		587
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 982
1 2 3 4 range
A 97.8
(-2.9)
P 		83.9
(-3)
P 		103.6
(-2.8)
P 		746.7
(3)
P 		663
B 88.6
(-3)
P 		97.5
(-2.9)
P 		119.7
(-2.8)
P 		1066.1
(3)
P 		978
C 94.2
(-3)
P 		109.3
(-2.9)
P 		150.4
(-2.5)
P 		789.3
(3)
P 		695
avr 93.5
(-3) 		96.9
(-3) 		124.6
(-2.8) 		867.4
(3) 		774

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 305
1 2 3 4 5 6 range
A 57.6
(-3)
P 		103.3
(-1.7)
P 		67.1
(-2.7)
P 		165.5
(0.1)
P 		264.1
(3)
P 		147
(-0.4)
P 		207
B 100.8
(-2.3)
P 		79.2
(-2.8)
P 		67.1
(-3)
P 		149.7
(-1.3)
P 		363
(3)
P 		185.9
(-0.6)
P 		296
C 103.9
(-1.7)
P 		79.1
(-2.4)
P 		61.6
(-3)
P 		112.4
(-1.4)
P 		252.2
(3)
P 		178.2
(0.7)
P 		191
avr 87.4
(-2.4) 		87.2
(-2.4) 		65.3
(-3) 		142.5
(-1) 		293.1
(3) 		170.4
(-0.2) 		228
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183991_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.426
Sequence Type Exemplar sequence
Representative Public ID B0511.5 NCBI
Target Description B0511.5 /REP_DB=WormBase Gene ID /WP=CE17344 /TR=O61816 /GB=AAC17653.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060379(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060379 NCBI Caenorhabditis elegans B0511.5 (B0511.5) mRNA, complete cds. 11/11 None
GENEFINDER00000031177 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10636938:10639678:1 11/11 None
SNAP00000031154 ENSEMBL cdna:SNAP chromosome:CEL140:I:10638225:10639678:1 11/11 None
B0511.5 ENSEMBL cdna:known chromosome:CEL140:I:10638225:10639678:1 gene:B0511.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10638155-10639609(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0511.5
Entrez Gene 182018 Entrez gene
SwissProt O61816 EMBL-EBI
WormBase CE17344 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17653 Hypothetical protein B0511.5 [Caenorhabditis elegans] ref|NP_492780.1| B0511.5 [Caenorhabditis elegans] 1.0E-130
blast AAC17653 Hypothetical protein B0511.5 [Caenorhabditis elegans] ref|NP_492780.1| B0511.5 [Caenorhabditis elegans] 1.0E-127
blast CAE67056 Hypothetical protein CBG12464 [Caenorhabditis briggsae] 1.0E-122
blast AAB66646 CUT-1-like cuticlin protein precursor [Ascaris lumbricoides] 1.0E-38
blast AAB66646 CUT-1-like cuticlin protein precursor [Ascaris lumbricoides] 1.0E-30
Protein Domains
Database ID Description E-Value
Pfam IPR001507 EMBL-EBI Endoglin/CD105 antigen 8.1E-12
Pfam IPR001507 EMBL-EBI Endoglin/CD105 antigen 8.2E-15
Sequence
Target Sequence 
>C. ELEGANS:183991_AT
gaaactggaagacgcaccacatccatcacagttccacgtgacaaatgtggagtcgagact
gttcaacacggaaaaggtgcaggatatacgtcatctgtcaatattgtcatttcattccac
gataaatttttgaccaaagttgatcgggcctataacattacttgtctttatgcaccaact
ggagatgttgtatcatatgcattgactgttcagccatcgcttctgaaagatattcaagtg
ctggctgagcaaccaagttgtgaatatgaagtgtttgatgtaagaactcgtcgtccagca
gaaattgttcatgttaatgcaccacttgagcacgtatggacttgtgacggaactaatctt
gatttgttctgtatgacagtacatgattgtgtgatcaacgagggcaaaagcaagcgtcgc
tcgaagattattgattcggaaggatgttcacttgacacaacacgacttccaaatcttcga
tatgagaacaataaattgtcagctcgtgtgatgtcaaaagcattccgatttggagatgat
gtagctgtagaattcgaatgcaacgttcgtctggatcttcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACTGGAAGACGCACCACATCCA 221 357 76 Antisense
ACATCCATCACAGTTCCACGTGACA 292 107 94 Antisense
TGGAGTCGAGACTGTTCAACACGGA 207 545 123 Antisense
GATCGGGCCTATAACATTACTTGTC 504 417 217 Antisense
TACTTGTCTTTATGCACCAACTGGA 448 643 234 Antisense
TGCATTGACTGTTCAGCCATCGCTT 222 579 273 Antisense
GAACTCGTCGTCCAGCAGAAATTGT 436 349 359 Antisense
AATGCACCACTTGAGCACGTATGGA 323 165 391 Antisense
GAGGGCAAAAGCAAGCGTCGCTCGA 491 401 475 Antisense
GGATGTTCACTTGACACAACACGAC 401 511 517 Antisense
ATGCAACGTTCGTCTGGATCTTCGA 575 41 633 Antisense
Sequence Source Affymetrix Proprietary Database