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[183989_at]

Description F07G6.7 /REP_DB=WormBase Gene ID /WP=CE07040 /TR=Q19169 /GB=AAA96072.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 16      6grp_high1_10_10 > 61      4grp_high_8_8 > 13      6grp_highest_nonorm > 90      6grp_total > 61      4grp_total > 11      6grp_highest_sub > 03_04      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 184
1 2 3 4 range
A 87.1
(-1.4)
P 		118
(-0.3)
P 		36.5
(-3)
A 		220.7
(3)
P 		184
B 94.1
(-1.8)
P 		66.9
(-3)
P 		70.5
(-2.8)
P 		199.6
(3)
P 		133
C 72.8
(-2.6)
P 		77.4
(-2.4)
P 		62.7
(-3)
P 		215.9
(3)
P 		153
avr 84.7
(-1.9) 		87.4
(-1.8) 		56.6
(-3) 		212.1
(3) 		156

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 135
1 2 3 4 5 6 range
A 120.2
(0)
P 		92.5
(-1.2)
P 		187.5
(3)
P 		171.8
(2.3)
P 		81.8
(-1.7)
P 		52.2
(-3)
P 		135
B 98.6
(-0.8)
P 		88.9
(-3)
P 		114.9
(3)
P 		114.1
(2.8)
P 		103.2
(0.3)
P 		89.9
(-2.8)
P 		26
C 87.4
(-2.6)
P 		135.1
(3)
P 		83.6
(-3)
P 		131
(2.5)
P 		101.3
(-0.9)
P 		95.6
(-1.6)
P 		52
avr 102.1
(-0.7) 		105.5
(-0.4) 		128.7
(2) 		139
(3) 		95.4
(-1.4) 		79.2
(-3) 		60
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 31.7
(2.8)
P 		25.6
(1.2)
P 		9.6
(-3)
A 		32.3
(3)
P 		23
B 30
(0.1)
P 		16.5
(-3)
P 		16.3
(-3)
P 		42.5
(3)
P 		26
C 24.1
(-2.1)
P 		22.3
(-2.8)
P 		21.9
(-3)
P 		36.4
(3)
P 		15
avr 28.6
(0.6) 		21.5
(-1.4) 		15.9
(-3) 		37.1
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 22.2
(-1.2)
P 		32.9
(0.9)
P 		40.8
(2.5)
P 		43.6
(3)
P 		24.7
(-0.7)
P 		12.7
(-3)
P 		31
B 34.3
(-0.3)
P 		29.6
(-2.3)
P 		27.9
(-3)
P 		30.2
(-2)
P 		41.9
(3)
P 		33.5
(-0.6)
P 		14
C 32.4
(0.3)
P 		41.2
(3)
P 		21.3
(-3)
P 		26.4
(-1.5)
P 		32.8
(0.5)
P 		32
(0.2)
P 		20
avr 29.6
(-0.5) 		34.6
(3) 		30
(-0.2) 		33.4
(2.2) 		33.1
(1.9) 		26.1
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183989_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18397
Sequence Type Exemplar sequence
Representative Public ID F07G6.7 NCBI
Target Description F07G6.7 /REP_DB=WormBase Gene ID /WP=CE07040 /TR=Q19169 /GB=AAA96072.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075914(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075914 NCBI Caenorhabditis elegans F07G6.7 (F07G6.7) mRNA, complete cds. 11/11 None
GENEFINDER00000009995 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1710288:1718563:-1 10/11 None
SNAP00000009968 ENSEMBL cdna:SNAP chromosome:CEL140:X:1716640:1720423:-1 9/11 None
F07G6.7 ENSEMBL cdna:known chromosome:CEL140:X:1716492:1717104:-1 gene:F07G6.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1716491-1717104(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F07G6.7
Entrez Gene 184154 Entrez gene
SwissProt Q19169 EMBL-EBI
WormBase CE07040 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508314 F07G6.6 [Caenorhabditis elegans] gb|AAA96071.1| Hypothetical protein F07G6.6 [Caenorhabditis elegans] 1.0E-163
blast NP_508315 F07G6.7 [Caenorhabditis elegans] gb|AAA96072.1| Hypothetical protein F07G6.7 [Caenorhabditis elegans] 1.0E-106
blast AAC68934 Hypothetical protein T12B5.10 [Caenorhabditis elegans] ref|NP_497300.1| T12B5.10 [Caenorhabditis elegans] 1.0E-92
blast AAC68933 Hypothetical protein T12B5.8 [Caenorhabditis elegans] ref|NP_497299.2| T12B5.8 [Caenorhabditis elegans] 7.0E-89
blast NP_508315 F07G6.7 [Caenorhabditis elegans] gb|AAA96072.1| Hypothetical protein F07G6.7 [Caenorhabditis elegans] 5.0E-63
blast AAC68934 Hypothetical protein T12B5.10 [Caenorhabditis elegans] ref|NP_497300.1| T12B5.10 [Caenorhabditis elegans] 3.0E-62
blast AAC68933 Hypothetical protein T12B5.8 [Caenorhabditis elegans] ref|NP_497299.2| T12B5.8 [Caenorhabditis elegans] 1.0E-59
blast AAC68933 Hypothetical protein T12B5.8 [Caenorhabditis elegans] ref|NP_497299.2| T12B5.8 [Caenorhabditis elegans] 3.0E-56
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 6.4E-53
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 6.4E-53
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 5.5E-60
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.3E-11
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.2E-32
Sequence
Target Sequence 
>C. ELEGANS:183989_AT
gatgcggaattgtttcttctctcatccagtttttgaagcccgaaaaatgtattctcgtaa
tggaaatagaactcaataagttctcttttgatgaagtccttacgattcttccatgttttg
aagataaagagctcaaaaaaattgaattgtcatgcattgcgtcaattgagagattcgaac
aaatcacccatttggagcaatggaaaaatgcggacaaactcgtattttgggactctaaga
ttgctagtacaatgatcattcatatgtttcatttcaaatgcttccgtattcacgacatgg
acgaggttccggcacaaatcgcgatccaaatgagagataatcttttgagaagaagtacat
ttcaaagttgcgagataatttttgcaaaatcaaagtcaaatccgattgaacttgcaaaag
tattcaaacctgactacatcggcgatagtgaattatttttgattcatttttcaaatggca
acagccaatttgatatttcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGCGGAATTGTTTCTTCTCTCAT 165 415 26 Antisense
AATTGAATTGTCATGCATTGCGTCA 59 179 165 Antisense
GAGAGATTCGAACAAATCACCCATT 567 395 193 Antisense
GGAAAAATGCGGACAAACTCGTATT 557 525 227 Antisense
AACTCGTATTTTGGGACTCTAAGAT 493 141 242 Antisense
CATTTCAAATGCTTCCGTATTCACG 396 215 295 Antisense
ATGCTTCCGTATTCACGACATGGAC 562 43 303 Antisense
CACGACATGGACGAGGTTCCGGCAC 256 199 316 Antisense
TTCCGGCACAAATCGCGATCCAAAT 299 695 332 Antisense
ATTCAAACCTGACTACATCGGCGAT 150 9 447 Antisense
GGCAACAGCCAATTTGATATTTCGC 475 533 502 Antisense
Sequence Source Affymetrix Proprietary Database