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[183988_at]

Description F55D12.6 /REP_DB=WormBase Gene ID /WP=CE17876 /TR=O62264 /GB=CAA99863.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 40      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 10.4
(-2.7)
A 		9.4
(-3)
A 		30.9
(3)
A 		17.1
(-0.9)
A 		22
B 5.4
(-3)
A 		14.8
(1.7)
A 		11.5
(0.1)
A 		17.4
(3)
A 		12
C 15.4
(-0.9)
A 		24.6
(3)
A 		10.5
(-3)
A 		12.9
(-2)
A 		14
avr 10.4
(-3) 		16.3
(1.9) 		17.6
(3) 		15.8
(1.5) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 11.3
(-2.5)
A 		10.7
(-2.5)
A 		4
(-3)
A 		13.1
(-2.4)
A 		76.5
(2)
A 		90.8
(3)
A 		87
B 17.6
(-2.3)
A 		45
(-0.1)
A 		8.4
(-3)
A 		8
(-3)
A 		85.6
(3)
A 		69.1
(1.7)
A 		78
C 9
(-2.7)
A 		5
(-2.9)
A 		36.4
(-1.3)
A 		3.1
(-3)
A 		98.1
(1.9)
A 		119.8
(3)
P 		117
avr 12.6
(-2.7) 		20.2
(-2.1) 		16.3
(-2.4) 		8.1
(-3) 		86.7
(2.5) 		93.2
(3) 		85
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 3.8
(-1.2)
A 		2
(-3)
A 		8.1
(3)
A 		2.5
(-2.5)
A 		6
B 1.7
(-3)
A 		3.6
(2.7)
A 		2.7
(0)
A 		3.7
(3)
A 		2
C 5.1
(0.6)
A 		7.1
(3)
A 		3.7
(-1.2)
A 		2.2
(-3)
A 		5
avr 3.5
(-0.9) 		4.2
(1.2) 		4.8
(3) 		2.8
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 2.1
(-2.7)
A 		3.8
(-2.2)
A 		0.9
(-3)
A 		3.3
(-2.4)
A 		23.1
(3)
A 		22.1
(2.7)
A 		22
B 6.1
(-2.3)
A 		15
(-0.6)
A 		2
(-3)
A 		2.1
(-3)
A 		34.8
(3)
A 		25.8
(1.4)
A 		33
C 3.3
(-2.6)
A 		1.5
(-2.9)
A 		9.3
(-1.7)
A 		0.6
(-3)
A 		31.7
(1.7)
A 		40.1
(3)
P 		40
avr 3.8
(-2.6) 		6.8
(-2) 		4.1
(-2.5) 		2
(-3) 		29.9
(3) 		29.3
(2.9) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183988_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.943
Sequence Type Exemplar sequence
Representative Public ID F55D12.6 NCBI
Target Description F55D12.6 /REP_DB=WormBase Gene ID /WP=CE17876 /TR=O62264 /GB=CAA99863.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059781(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059781 NCBI Caenorhabditis elegans F55D12.6 (F55D12.6) mRNA, complete cds. 11/11 None
SNAP00000016630 ENSEMBL cdna:SNAP chromosome:CEL140:I:7910387:7911314:1 9/11 None
GENEFINDER00000016633 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7910444:7911314:1 9/11 None
F55D12.6 ENSEMBL cdna:known chromosome:CEL140:I:7910096:7911314:1 gene:F55D12.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7910056-7911245(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55D12.6
Entrez Gene 172559 Entrez gene
SwissProt O62264 EMBL-EBI
WormBase CE17876 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA99863 Hypothetical protein F55D12.6 [Caenorhabditis elegans] ref|NP_492182.1| F55D12.6 [Caenorhabditis elegans] 5.0E-52
blast CAA99863 Hypothetical protein F55D12.6 [Caenorhabditis elegans] ref|NP_492182.1| F55D12.6 [Caenorhabditis elegans] 1.0E-43
blast CAA99863 Hypothetical protein F55D12.6 [Caenorhabditis elegans] ref|NP_492182.1| F55D12.6 [Caenorhabditis elegans] 2.0E-43
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492182.1 1 150-172
F55D12.6 1 150-172
SNAP00000016630 1 153-175
GENEFINDER00000016633 1 134-156
Sequence
Target Sequence 
>C. ELEGANS:183988_AT
ctagtaaacttctcctactcttgctcgtcgtctgtgctgctcatatgggcataaatgttt
atggtcaaaaaattcgccaagcggacctgtccggagttgagactgaacccggaaagccat
acaatggcatcagacaatcggtgagacatatggacgagaatccggagtatgaaagagaaa
aaggagtattgattcgtaacaagagagatgctacagcaacaccaggagcagcttcttcag
caaaaccaggagacgtttccacaccacaaccagggggtgctgccaaagctgctgcaaacc
caggagctgctactgcagcgagcccagacgctgctgctatatcaaagccaggagctgctg
ctgtcacagcaaaaccaggggcagcaccgaaaaagccaactgcgcaaggagtgaagagaa
gagaaggcttcttcgtcgtcttcctggctctcaccctgaccctcgtcttcctcagccttg
ttagcatcggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTAGTAAACTTCTCCTACTCTTGCT 658 213 17 Antisense
TCGTCTGTGCTGCTCATATGGGCAT 336 603 44 Antisense
GCGGACCTGTCCGGAGTTGAGACTG 216 293 97 Antisense
CAGGAGCAGCTTCTTCAGCAAAACC 12 209 239 Antisense
CACACCACAACCAGGGGGTGCTGCC 688 193 276 Antisense
TGCTGCAAACCCAGGAGCTGCTACT 87 581 306 Antisense
AGCTGCTACTGCAGCGAGCCCAGAC 170 81 321 Antisense
GACGCTGCTGCTATATCAAAGCCAG 146 381 343 Antisense
TCAAAGCCAGGAGCTGCTGCTGTCA 424 629 358 Antisense
GTCACAGCAAAACCAGGGGCAGCAC 225 465 379 Antisense
TTCCTCAGCCTTGTTAGCATCGGAT 484 699 484 Antisense
Sequence Source Affymetrix Proprietary Database