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[183987_at]

Description F36A4.5 /REP_DB=WormBase Gene ID /WP=CE07181 /TR=Q20092 /GB=AAA96160.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 36      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 2.5
(-2)
A 		9.6
(3)
A 		1.1
(-3)
A 		7
(1.2)
A 		9
B 1.7
(3)
A 		1.4
(1.2)
A 		1.6
(2.4)
A 		0.7
(-3)
A 		1
C 5.1
(3)
A 		3.6
(0.5)
A 		2.3
(-1.7)
A 		1.5
(-3)
A 		4
avr 3.1
(-0.4) 		4.9
(3) 		1.7
(-3) 		3.1
(-0.4) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 5.4
(3)
A 		0.9
(-3)
A 		2.9
(-0.3)
A 		1.5
(-2.2)
A 		4.7
(2.1)
A 		2.1
(-1.4)
A 		5
B 2.4
(-2.3)
A 		2.2
(-2.4)
A 		2.6
(-2.2)
A 		4.4
(-1.4)
A 		14.7
(3)
A 		0.7
(-3)
A 		14
C 0.5
(-3)
A 		2.6
(-2.4)
A 		1.5
(-2.7)
A 		4
(-1.9)
A 		20.2
(3)
A 		4.1
(-1.9)
A 		20
avr 2.8
(-2.5) 		1.9
(-3) 		2.3
(-2.8) 		3.3
(-2.3) 		13.2
(3) 		2.3
(-2.8) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 0.9
(-1)
A 		2.1
(3)
A 		0.3
(-3)
A 		1
(-0.7)
A 		2
B 0.5
(3)
A 		0.3
(-0)
A 		0.4
(1.5)
A 		0.1
(-3)
A 		0
C 1.7
(3)
A 		1
(-0)
A 		0.8
(-0.9)
A 		0.3
(-3)
A 		1
avr 1
(2) 		1.1
(3) 		0.5
(-3) 		0.5
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 1
(0.8)
A 		0.3
(-3)
A 		0.6
(-1.4)
A 		0.4
(-2.5)
A 		1.4
(3)
A 		0.5
(-1.9)
A 		1
B 0.8
(-2.5)
A 		0.7
(-2.6)
A 		0.6
(-2.7)
A 		1.2
(-2.1)
A 		6
(3)
A 		0.3
(-3)
A 		6
C 0.2
(-3)
A 		0.8
(-2.4)
A 		0.4
(-2.8)
A 		0.8
(-2.4)
A 		6.5
(3)
A 		1.4
(-1.9)
A 		6
avr 0.7
(-2.7) 		0.6
(-2.9) 		0.5
(-3) 		0.8
(-2.6) 		4.6
(3) 		0.7
(-2.7) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183987_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11144
Sequence Type Exemplar sequence
Representative Public ID F36A4.5 NCBI
Target Description F36A4.5 /REP_DB=WormBase Gene ID /WP=CE07181 /TR=Q20092 /GB=AAA96160.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068124(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068124 NCBI Caenorhabditis elegans F36A4.5 (F36A4.5) mRNA, complete cds. 11/11 None
SNAP00000033265 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4266279:4266555:1 11/11 None
F36A4.5 ENSEMBL cdna:known chromosome:CEL140:IV:4266278:4266555:1 gene:F36A4.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4266284-4266561(+) 94.81 100.0
Public Domain and Genome References
Gene Title
Ensembl F36A4.5
Entrez Gene 185342 Entrez gene
SwissProt Q20092 EMBL-EBI
WormBase CE07181 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA96160 Hypothetical protein F36A4.5 [Caenorhabditis elegans] ref|NP_500525.1| F36A4.5 [Caenorhabditis elegans] 6.0E-40
Protein Domains
Database ID Description E-Value
Pfam IPR008588 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF870 1.7E-22
Sequence
Target Sequence 
>C. ELEGANS:183987_AT
tggaagccctagattcatcgtcttttacatttccacaggactacgagttctcctatgttg
tcaatcataattgctccgcggacggaaacacttattgtgtgcaacctgtcaaaccaacaa
ccgttagtagatttggaacgcgatatataaagttcgacattaaagctctcccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAAGCCCTAGATTCATCGTCTTT 269 547 14 Antisense
TCATCGTCTTTTACATTTCCACAGG 460 621 28 Antisense
CATTTCCACAGGACTACGAGTTCTC 346 215 41 Antisense
ACGAGTTCTCCTATGTTGTCAATCA 683 93 56 Antisense
AATCATAATTGCTCCGCGGACGGAA 429 169 76 Antisense
TCCGCGGACGGAAACACTTATTGTG 48 587 88 Antisense
ACACTTATTGTGTGCAACCTGTCAA 343 111 101 Antisense
GTGTGCAACCTGTCAAACCAACAAC 17 489 110 Antisense
GTCAAACCAACAACCGTTAGTAGAT 652 459 121 Antisense
TAGTAGATTTGGAACGCGATATATA 24 655 138 Antisense
AAGTTCGACATTAAAGCTCTCCCAG 240 157 163 Antisense
Sequence Source Affymetrix Proprietary Database