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[183986_s_at]

Description T09E11.3 /REP_DB=WormBase Gene ID /WP=CE13501 /TR=Q9XVF9 /GB=CAB03530.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 2.9
(-3)
A 		5.1
(-2.3)
A 		6.4
(-1.8)
A 		20.9
(3)
A 		18
B 15.2
(3)
A 		4.9
(-1.8)
A 		5.5
(-1.5)
A 		2.3
(-3)
A 		13
C 1.6
(-3)
A 		3.9
(-2.8)
A 		3.5
(-2.9)
A 		82.3
(3)
A 		81
avr 6.6
(-2.6) 		4.6
(-3) 		5.1
(-2.9) 		35.2
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 28.4
(3)
A 		5.6
(-2)
A 		5.7
(-2)
A 		7.5
(-1.6)
A 		8
(-1.5)
A 		1.3
(-3)
A 		27
B 3.7
(-2.8)
A 		10.5
(-1.4)
A 		31.2
(3)
A 		2.7
(-3)
A 		4.5
(-2.6)
A 		5
(-2.5)
A 		29
C 2.4
(-2.6)
A 		27.2
(3)
A 		19.9
(1.4)
A 		2
(-2.7)
A 		1.4
(-2.8)
A 		0.6
(-3)
A 		27
avr 11.5
(0.3) 		14.4
(1.4) 		18.9
(3) 		4.1
(-2.3) 		4.6
(-2.2) 		2.3
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 1.1
(-3)
A 		1.1
(-3)
A 		1.7
(-1.2)
A 		3.1
(3)
A 		2
B 4.8
(3)
A 		1.2
(-2)
A 		1.3
(-1.9)
A 		0.5
(-3)
A 		4
C 0.5
(-3)
A 		1.1
(-2.7)
A 		1.2
(-2.7)
A 		13.9
(3)
A 		13
avr 2.1
(-1.7) 		1.1
(-3) 		1.4
(-2.6) 		5.8
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 5.2
(3)
A 		2
(-0.9)
A 		1.2
(-1.9)
A 		1.9
(-1)
A 		2.4
(-0.4)
A 		0.3
(-3)
A 		5
B 1.3
(-2.5)
A 		3.5
(-0.6)
A 		7.6
(3)
A 		0.7
(-3)
A 		1.8
(-2)
A 		1.9
(-2)
A 		7
C 0.9
(-2.5)
A 		8.3
(3)
A 		5.1
(0.6)
A 		0.4
(-2.9)
A 		0.5
(-2.8)
A 		0.2
(-3)
A 		8
avr 2.5
(-0.3) 		4.6
(3) 		4.6
(3) 		1
(-2.7) 		1.6
(-1.7) 		0.8
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183986_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.574
Sequence Type Exemplar sequence
Representative Public ID T09E11.3 NCBI
Target Description T09E11.3 /REP_DB=WormBase Gene ID /WP=CE13501 /TR=Q9XVF9 /GB=CAB03530.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060730(11), NM_060731(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060730 NCBI Caenorhabditis elegans T09E11.3 (T09E11.3) mRNA, complete cds. 11/11 A 
NM_060731 NCBI Caenorhabditis elegans T15D6.1 (T15D6.1) mRNA, complete cds. 11/11 A 
GENEFINDER00000042476 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12377311:12378579:1 10/11 None
T09E11.3 ENSEMBL cdna:known chromosome:CEL140:I:12377311:12378729:1 gene:T09E11.3 11/11 A 
T15D6.1 ENSEMBL cdna:known chromosome:CEL140:I:12379472:12380769:1 gene:T15D6.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000012740 7/11 Cross Hyb Matching Probes None
SNAP00000042470 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12377241-12378660(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T09E11.3
T15D6.1
Entrez Gene 188331 Entrez gene
SwissProt Q9XVF9 EMBL-EBI
WormBase CE13501 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03540 Hypothetical protein T15D6.1 [Caenorhabditis elegans] emb|CAB05627.1| Hypothetical protein T15D6.1 [Caenorhabditis elegans] ref|NP_493132.1| T15D6.1 [Caenorhabditis elegans] 1.0E-171
blast CAB03530 Hypothetical protein T09E11.3 [Caenorhabditis elegans] ref|NP_493131.1| T09E11.3 [Caenorhabditis elegans] 1.0E-164
blast CAB03530 Hypothetical protein T09E11.3 [Caenorhabditis elegans] ref|NP_493131.1| T09E11.3 [Caenorhabditis elegans] 1.0E-150
blast CAB03540 Hypothetical protein T15D6.1 [Caenorhabditis elegans] emb|CAB05627.1| Hypothetical protein T15D6.1 [Caenorhabditis elegans] ref|NP_493132.1| T15D6.1 [Caenorhabditis elegans] 1.0E-143
blast CAB03530 Hypothetical protein T09E11.3 [Caenorhabditis elegans] ref|NP_493131.1| T09E11.3 [Caenorhabditis elegans] 1.0E-133
blast CAB03540 Hypothetical protein T15D6.1 [Caenorhabditis elegans] emb|CAB05627.1| Hypothetical protein T15D6.1 [Caenorhabditis elegans] ref|NP_493132.1| T15D6.1 [Caenorhabditis elegans] 1.0E-119
Protein Domains
Database ID Description E-Value
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 1.0E-126
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 1.0E-126
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493131.1 1 4-21
T09E11.3 1 4-21
GENEFINDER00000042476 1 4-21
Sequence
Target Sequence 
>C. ELEGANS:183986_S_AT
gtaaaatttgcattcatccgggaccccttgcaacgatttgtttcgttctacctcgacaaa
tgtgttagagaaaacagatgttacgattgcggctcgaatatgatatgtatcgtggaaaaa
gtgtacagtaatctgaaaaagattcaaaattcgtgggatggaacttcagaacttggatac
gtggagcgacatgctgctccaatgtcctggaactgcaatttccacaaaggtctagacagt
tgggagctgataccgattggttcggatgcaaatgaaagaactattgcaattgaacgattg
tcgggtctattaaagaaacagggtgtaaatcagacattgattgaaaaagttcaagaagga
atgaaaactggcgaaacggagcactcaacacactcctcaacaggtcgtattaaagcggaa
cggcaagtacgtgaagatccatacattcaaaatttactccataaaatttatttctttgat
tatctagttttcccgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAAAATTTGCATTCATCCGGGACC 461 461 355 Antisense
GTTTCGTTCTACCTCGACAAATGTG 544 449 394 Antisense
CGTTCTACCTCGACAAATGTGTTAG 265 245 398 Antisense
GGAACTTCAGAACTTGGATACGTGG 499 529 514 Antisense
CATGCTGCTCCAATGTCCTGGAACT 611 209 544 Antisense
CTGCTCCAATGTCCTGGAACTGCAA 502 237 548 Antisense
TGTCCTGGAACTGCAATTTCCACAA 580 557 557 Antisense
GAAAGAACTATTGCAATTGAACGAT 708 355 628 Antisense
GAACGATTGTCGGGTCTATTAAAGA 177 347 646 Antisense
AACAGGGTGTAAATCAGACATTGAT 675 131 671 Antisense
TCTTTGATTATCTAGTTTTCCCGTT 320 615 827 Antisense
Sequence Source Affymetrix Proprietary Database