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[183985_at]

Description T09E11.3 /REP_DB=WormBase Gene ID /WP=CE13501 /TR=Q9XVF9 /GB=CAB03530.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 75      4grp_total > 26      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 3.3
(-3)
A 		45.6
(3)
M 		3.4
(-3)
A 		41.2
(2.4)
A 		42
B 3.5
(-3)
A 		18.3
(3)
A 		7.8
(-1.3)
A 		5.7
(-2.1)
A 		15
C 9.9
(-2.4)
A 		4.4
(-3)
A 		30.8
(-0.1)
A 		58.4
(3)
P 		54
avr 5.6
(-3) 		22.8
(0.5) 		14
(-1.3) 		35.1
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 3.2
(-3)
A 		2.9
(-3)
A 		4.4
(-2.8)
A 		36.4
(2.5)
A 		4.1
(-2.8)
A 		39.6
(3)
A 		37
B 13.2
(0.4)
A 		4.3
(-2.9)
A 		5.5
(-2.5)
A 		4.1
(-3)
A 		20.1
(3)
A 		5.8
(-2.4)
A 		16
C 6.7
(-1.3)
A 		3.1
(-2.8)
A 		17.7
(3)
A 		2.5
(-3)
A 		6.9
(-1.3)
A 		10.2
(0)
A 		15
avr 7.7
(-1.3) 		3.4
(-3) 		9.2
(-0.7) 		14.3
(1.3) 		10.4
(-0.2) 		18.5
(3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.2
(-2.8)
A 		9.9
(3)
M 		0.9
(-3)
A 		6
(0.4)
A 		9
B 1.1
(-3)
A 		4.5
(3)
A 		1.8
(-1.8)
A 		1.2
(-2.8)
A 		3
C 3.3
(-1.7)
A 		1.3
(-3)
A 		10.7
(3)
A 		9.8
(2.4)
P 		9
avr 1.9
(-3) 		5.2
(2.2) 		4.5
(1.1) 		5.7
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.6
(-3)
A 		1
(-2.7)
A 		1
(-2.7)
A 		9.2
(2.7)
A 		1.2
(-2.6)
A 		9.6
(3)
A 		9
B 4.6
(-0)
A 		1.4
(-2.7)
A 		1.3
(-2.8)
A 		1.1
(-3)
A 		8.1
(3)
A 		2.2
(-2.1)
A 		7
C 2.5
(0)
A 		0.9
(-2.4)
A 		4.5
(3)
A 		0.5
(-3)
A 		2.2
(-0.5)
A 		3.4
(1.4)
A 		4
avr 2.6
(-0.8) 		1.1
(-3) 		2.3
(-1.2) 		3.6
(0.8) 		3.8
(1.1) 		5.1
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183985_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.574
Sequence Type Exemplar sequence
Representative Public ID T09E11.3 NCBI
Target Description T09E11.3 /REP_DB=WormBase Gene ID /WP=CE13501 /TR=Q9XVF9 /GB=CAB03530.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060730(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060730 NCBI Caenorhabditis elegans T09E11.3 (T09E11.3) mRNA, complete cds. 11/11 A 
T09E11.3 ENSEMBL cdna:known chromosome:CEL140:I:12377311:12378729:1 gene:T09E11.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000042476 7/11 Cross Hyb Matching Probes None
SNAP00000042470 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12377241-12378660(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T09E11.3
Entrez Gene 188331 Entrez gene
SwissProt Q9XVF9 EMBL-EBI
WormBase CE13501 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03530 Hypothetical protein T09E11.3 [Caenorhabditis elegans] ref|NP_493131.1| T09E11.3 [Caenorhabditis elegans] 1.0E-164
blast CAB03540 Hypothetical protein T15D6.1 [Caenorhabditis elegans] emb|CAB05627.1| Hypothetical protein T15D6.1 [Caenorhabditis elegans] ref|NP_493132.1| T15D6.1 [Caenorhabditis elegans] 1.0E-143
blast CAB04492 Hypothetical protein F56H6.4 [Caenorhabditis elegans] ref|NP_493105.1| F56H6.4 [Caenorhabditis elegans] 4.0E-84
Protein Domains
Database ID Description E-Value
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493131.1 1 4-21
T09E11.3 1 4-21
Sequence
Target Sequence 
>C. ELEGANS:183985_AT
atacatccactggagccaatccacaaaggaaccgtaaaatttgcattcatccgggacccc
ttgcaacgatttgtttcgttctacctcgacaaatgtgttagagaaaacagatgttacgat
tgcggctcgaatatgatatgtatcgtggaaaaagtgtacagtaatctgaaaaagattcaa
aattcgtgggatggaacttcagaacttggatacgtggagcgacatgctgctccaatgtcc
tggaactgcaatttccacaaaggtctagacagttgggagctgataccgattggttcggat
gcaaatgaaagaactattgcaattgaacgattgtcgggtctattaaagaaacagggtgta
aatcagacattgattgaaaaagttcaagaaggaatgaaaactggcgaaacggagcactca
acacactcctcaacaggtcgtattaaagcggaacggcaagtacgtgaagatccatacatt
caaaatttactccataaaatttatttctttgattatctagttttcccgtttaccaaggat
ttcaaaattccatttgccacgagtcaatatcatcggac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATACATCCACTGGAGCCAATCCACA 461 23 322 Antisense
GGAGCCAATCCACAAAGGAACCGTA 354 513 333 Antisense
GACCCCTTGCAACGATTTGTTTCGT 672 381 376 Antisense
GATGTTACGATTGCGGCTCGAATAT 401 407 431 Antisense
GCAATTTCCACAAAGGTCTAGACAG 646 321 569 Antisense
GAAACGGAGCACTCAACACACTCCT 90 357 727 Antisense
AACACACTCCTCAACAGGTCGTATT 255 135 741 Antisense
GGAACGGCAAGTACGTGAAGATCCA 110 531 771 Antisense
GATCCATACATTCAAAATTTACTCC 450 415 790 Antisense
TCAAAATTCCATTTGCCACGAGTCA 398 629 863 Antisense
TTGCCACGAGTCAATATCATCGGAC 603 701 875 Antisense
Sequence Source Affymetrix Proprietary Database