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[183984_at]

Description C49H3.3 /REP_DB=WormBase Gene ID /WP=CE04229 /TR=Q9GYQ6 /GB=AAF99893.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 67      6grp_high1_10_10 > 75      4grp_highest_8_8 > 07      4grp_high_8_8 > 22      6grp_highest_nonorm > 47      6grp_total > 66      4grp_total > 17      6grp_highest_sub > In      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3526
1 2 3 4 range
A 2708.5
(-3)
P 		3148.7
(-2.2)
P 		2804.9
(-2.8)
P 		6135.2
(3)
P 		3427
B 2725.3
(-3)
P 		3947.4
(-0.9)
P 		3871.5
(-1)
P 		6234.3
(3)
P 		3509
C 3231.6
(-3)
P 		3857.1
(-1.5)
P 		3530.8
(-2.3)
P 		5725.4
(3)
P 		2494
avr 2888.5
(-3) 		3651.1
(-1.5) 		3402.4
(-2) 		6031.6
(3) 		3143

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2922
1 2 3 4 5 6 range
A 2967.4
(-1.3)
P 		2516.2
(-3)
P 		4134.1
(3)
P 		2874
(-1.7)
P 		3296.7
(-0.1)
P 		3430.3
(0.4)
P 		1618
B 2811.3
(-3)
P 		3274
(-1.3)
P 		3200.6
(-1.6)
P 		2856.1
(-2.8)
P 		3182.9
(-1.7)
P 		4469.8
(3)
P 		1659
C 2025.6
(-3)
P 		3257.7
(-0.5)
P 		2422.5
(-2.2)
P 		3458.7
(-0.1)
P 		2111.3
(-2.8)
P 		4947.3
(3)
P 		2922
avr 2601.4
(-3) 		3016
(-1.5) 		3252.4
(-0.7) 		3062.9
(-1.4) 		2863.6
(-2.1) 		4282.5
(3) 		1681
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 645
1 2 3 4 range
A 986.2
(3)
P 		683.5
(-3)
P 		733.3
(-2)
P 		898.1
(1.3)
P 		303
B 869.1
(-3)
P 		974.9
(-1.6)
P 		897.1
(-2.6)
P 		1328.5
(3)
P 		459
C 1069.7
(-0.6)
P 		1108.9
(0.2)
P 		1230.6
(3)
P 		965.4
(-3)
P 		265
avr 975
(-0.8) 		922.4
(-3) 		953.7
(-1.7) 		1064
(3) 		142

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1120
1 2 3 4 5 6 range
A 547
(-3)
P 		894.9
(1.7)
P 		900.3
(1.7)
P 		728.9
(-0.6)
P 		994.8
(3)
P 		835.2
(0.9)
P 		448
B 978.2
(-1.5)
P 		1089.8
(-0.8)
P 		777.2
(-2.9)
P 		756.5
(-3)
P 		1293.2
(0.5)
P 		1666.8
(3)
P 		910
C 750.8
(-2.2)
P 		994
(-0.8)
P 		616.6
(-3)
P 		695.5
(-2.5)
P 		683.2
(-2.6)
P 		1656.1
(3)
P 		1040
avr 758.7
(-2.7) 		992.9
(-0.6) 		764.7
(-2.7) 		727
(-3) 		990.4
(-0.6) 		1386
(3) 		659
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183984_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8504
Sequence Type Exemplar sequence
Representative Public ID C49H3.3 NCBI
Target Description C49H3.3 /REP_DB=WormBase Gene ID /WP=CE04229 /TR=Q9GYQ6 /GB=AAF99893.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068920(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068920 NCBI Caenorhabditis elegans C49H3.3 (C49H3.3) mRNA, complete cds. 11/11 None
SNAP00000028672 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7924375:7924763:1 10/11 None
GENEFINDER00000028680 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7924375:7924869:1 11/11 None
C49H3.3 ENSEMBL cdna:known chromosome:CEL140:IV:7924333:7924951:1 gene:C49H3.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7924380-7924875(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C49H3.3
Entrez Gene 177582 Entrez gene
SwissProt Q9GYQ6 EMBL-EBI
WormBase CE04229 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99893 Hypothetical protein C49H3.3 [Caenorhabditis elegans] ref|NP_501321.1| C49H3.3 [Caenorhabditis elegans] 1.0E-41
blast AAF99893 Hypothetical protein C49H3.3 [Caenorhabditis elegans] ref|NP_501321.1| C49H3.3 [Caenorhabditis elegans] 5.0E-41
blast CAE70911 Hypothetical protein CBG17708 [Caenorhabditis briggsae] 1.0E-30
blast CAE70911 Hypothetical protein CBG17708 [Caenorhabditis briggsae] 5.0E-30
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000028672 1 78-95
Sequence
Target Sequence 
>C. ELEGANS:183984_AT
gagaagagttcgtgctatcgccagaaccaagaaggaaccaaagacggcagctcttcttca
gaaagcaatcgataaacgtgacgagtacgaaaaacaagatgcagaaaaaacaaagaccga
tggaactgctaatgaagaaaagatggaagtaacatctcaggctacaatcaacacaaagac
cctcaaaaagaaggatggttcattcccagcatggctctctggaacgcagaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAAGAGTTCGTGCTATCGCCAGA 402 391 42 Antisense
TCGTGCTATCGCCAGAACCAAGAAG 678 605 51 Antisense
GAACCAAAGACGGCAGCTCTTCTTC 552 345 76 Antisense
GGCAGCTCTTCTTCAGAAAGCAATC 566 535 87 Antisense
GCAATCGATAAACGTGACGAGTACG 252 319 106 Antisense
AAGACCGATGGAACTGCTAATGAAG 389 153 154 Antisense
GGAAGTAACATCTCAGGCTACAATC 689 531 186 Antisense
GGCTACAATCAACACAAAGACCCTC 122 503 201 Antisense
AGAAGGATGGTTCATTCCCAGCATG 434 75 230 Antisense
TCATTCCCAGCATGGCTCTCTGGAA 617 619 241 Antisense
GCATGGCTCTCTGGAACGCAGAAGA 442 311 250 Antisense
Sequence Source Affymetrix Proprietary Database