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[183983_at]

Description C17C3.6 /REP_DB=WormBase Gene ID /WP=CE04026 /TR=Q18058 /GB=AAK31420.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 1.6
(-3)
A 		4.8
(0.6)
A 		2.6
(-1.9)
A 		7
(3)
A 		5
B 2.8
(-3)
A 		25.3
(3)
A 		4.1
(-2.7)
A 		4.2
(-2.6)
A 		23
C 3.1
(-2.8)
A 		3.4
(-2.7)
A 		1.3
(-3)
A 		45.7
(3)
A 		44
avr 2.5
(-3) 		11.2
(0.2) 		2.7
(-2.9) 		19
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 5.8
(-2.5)
A 		3
(-3)
A 		4.3
(-2.8)
A 		3.8
(-2.9)
A 		40.1
(3)
A 		14.6
(-1.1)
A 		37
B 3.1
(-3)
A 		10.9
(-0.9)
A 		23.5
(2.5)
A 		3.3
(-2.9)
A 		25.2
(3)
A 		3.2
(-3)
A 		22
C 29.7
(0.6)
A 		3.7
(-3)
A 		16.5
(-1.2)
A 		3.5
(-3)
A 		47
(3)
A 		6.6
(-2.6)
A 		44
avr 12.9
(-1.3) 		5.9
(-2.6) 		14.8
(-1) 		3.5
(-3) 		37.4
(3) 		8.1
(-2.2) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 0.6
(-3)
A 		1
(3)
A 		0.7
(-1.5)
A 		1
(3)
A 		0
B 0.9
(-3)
A 		6.3
(3)
A 		1
(-2.9)
A 		0.9
(-3)
A 		5
C 1
(-2.6)
A 		1
(-2.6)
A 		0.5
(-3)
A 		7.7
(3)
A 		7
avr 0.8
(-2.8) 		2.8
(2) 		0.7
(-3) 		3.2
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 1.1
(-2.9)
A 		1.1
(-2.9)
A 		0.9
(-3)
A 		1
(-2.9)
A 		12.1
(3)
A 		3.5
(-1.6)
A 		11
B 1.1
(-2.9)
A 		3.6
(-1.3)
A 		5.7
(0.1)
A 		0.9
(-3)
A 		10.3
(3)
A 		1.2
(-2.8)
A 		9
C 11
(1.3)
A 		1.1
(-2.8)
A 		4.2
(-1.6)
A 		0.7
(-3)
A 		15.2
(3)
A 		2.2
(-2.4)
A 		15
avr 4.4
(-1.2) 		1.9
(-2.5) 		3.6
(-1.6) 		0.9
(-3) 		12.5
(3) 		2.3
(-2.3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183983_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5338
Sequence Type Exemplar sequence
Representative Public ID C17C3.6 NCBI
Target Description C17C3.6 /REP_DB=WormBase Gene ID /WP=CE04026 /TR=Q18058 /GB=AAK31420.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062668(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062668 NCBI Caenorhabditis elegans C17C3.6 (C17C3.6) mRNA, complete cds. 11/11 None
GENEFINDER00000005303 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5550016:5550500:1 11/11 None
C17C3.6 ENSEMBL cdna:known chromosome:CEL140:II:5550016:5550500:1 gene:C17C3.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005291 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5550013-5550498(+) 94.33 100.0
Public Domain and Genome References
Gene Title
Ensembl C17C3.6
Entrez Gene 182716 Entrez gene
SwissProt Q18058 EMBL-EBI
WormBase CE04026 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31420 Hypothetical protein C17C3.6 [Caenorhabditis elegans] ref|NP_495069.1| C17C3.6 [Caenorhabditis elegans] 1.0E-65
blast CAB05251 Hypothetical protein M162.8 [Caenorhabditis elegans] ref|NP_507832.1| M162.8 [Caenorhabditis elegans] 2.0E-10
blast CAB54328 Hypothetical protein Y113G7B.6 [Caenorhabditis elegans] ref|NP_507898.1| Y113G7B.6 [Caenorhabditis elegans] 5.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.3E-12
Sequence
Target Sequence 
>C. ELEGANS:183983_AT
gatgcggtcggaatgattgtacgtaaacaatctgaatttgaagaaaattcacataatttc
aacaataacggcccatcactctccgatatgccaattgaagttattcacaatattgtcgac
tacgtggatccaattaatatactcgtcattcgaaaagtctgccgaaaactacggaatgta
ctcgatggagatccgaaattcaaagatgtccatcttcatcagccaacctcattggatatg
aactttagtttggaacttgatgactcgtgggttgactatcgtacgaatgggtctggatca
gggctgggactttttcgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGCGGTCGGAATGATTGTACGTA 371 413 40 Antisense
TTCAACAATAACGGCCCATCACTCT 4 685 97 Antisense
TCACTCTCCGATATGCCAATTGAAG 128 625 115 Antisense
AATATTGTCGACTACGTGGATCCAA 590 173 148 Antisense
GTGGATCCAATTAATATACTCGTCA 329 489 163 Antisense
AAAGATGTCCATCTTCATCAGCCAA 423 123 241 Antisense
TCTTCATCAGCCAACCTCATTGGAT 497 615 252 Antisense
GTTTGGAACTTGATGACTCGTGGGT 324 447 287 Antisense
ATGACTCGTGGGTTGACTATCGTAC 55 45 299 Antisense
ACTATCGTACGAATGGGTCTGGATC 358 101 314 Antisense
GATCAGGGCTGGGACTTTTTCGAAA 458 421 335 Antisense
Sequence Source Affymetrix Proprietary Database