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[183982_s_at]

Description R02D3.4 /REP_DB=WormBase Gene ID /WP=CE18098 /TR=O44500 /GB=AAB94145.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 86      4grp_highest_8_8 > 43      4grp_high_8_8 > 24      6grp_highest_nonorm > 92      6grp_total > 79      4grp_total > 47      6grp_highest_sub > Da      6grp_high1_sub > In      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 219
1 2 3 4 range
A 241.2
(3)
P 		167.2
(-2.7)
P 		162.9
(-3)
P 		210.3
(0.6)
P 		78
B 268.7
(3)
P 		172.9
(-0.9)
P 		198.4
(0.1)
P 		122.9
(-3)
P 		146
C 341.4
(3)
P 		182.8
(-3)
P 		240.2
(-0.8)
P 		251.6
(-0.4)
P 		159
avr 283.8
(3) 		174.3
(-3) 		200.5
(-1.6) 		194.9
(-1.9) 		110

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 400
1 2 3 4 5 6 range
A 69.9
(-3)
P 		266.5
(1.7)
P 		244.4
(1.2)
P 		143.4
(-1.2)
P 		246.6
(1.2)
P 		320.1
(3)
P 		250
B 235
(-2.2)
P 		210.4
(-2.8)
P 		201
(-3)
P 		234.9
(-2.2)
P 		325.7
(-0)
P 		451.6
(3)
P 		251
C 142.7
(-2.6)
P 		267.3
(-0.5)
P 		120.2
(-3)
P 		146.4
(-2.6)
P 		245.2
(-0.9)
P 		470
(3)
P 		350
avr 149.2
(-3) 		248.1
(-0.8) 		188.5
(-2.1) 		174.9
(-2.4) 		272.5
(-0.2) 		413.9
(3) 		265
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 87.8
(3)
P 		36.3
(-2.4)
P 		42.6
(-1.8)
P 		30.8
(-3)
P 		57
B 85.7
(3)
P 		42.7
(-1.3)
P 		46
(-1)
P 		26.2
(-3)
P 		60
C 113
(3)
P 		52.5
(-2.1)
P 		83.7
(0.5)
P 		42.4
(-3)
P 		71
avr 95.5
(3) 		43.8
(-2) 		57.4
(-0.7) 		33.1
(-3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 156
1 2 3 4 5 6 range
A 12.9
(-3)
P 		94.8
(3)
P 		53.2
(-0)
P 		36.4
(-1.3)
P 		74.4
(1.5)
P 		77.9
(1.8)
P 		82
B 81.8
(-1.3)
P 		70
(-1.9)
P 		48.8
(-3)
P 		62.2
(-2.3)
P 		132.3
(1.2)
P 		168.4
(3)
P 		120
C 52.9
(-1.9)
P 		81.6
(-0.6)
P 		30.6
(-2.9)
P 		29.4
(-3)
P 		79.3
(-0.7)
P 		157.3
(3)
P 		128
avr 49.2
(-2.6) 		82.1
(-0.4) 		44.2
(-2.9) 		42.7
(-3) 		95.3
(0.4) 		134.5
(3) 		92
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183982_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11244
Sequence Type Exemplar sequence
Representative Public ID R02D3.4 NCBI
Target Description R02D3.4 /REP_DB=WormBase Gene ID /WP=CE18098 /TR=O44500 /GB=AAB94145.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067480(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067480 NCBI Caenorhabditis elegans R02D3.4 (R02D3.4) mRNA, complete cds. 11/11 None
SNAP00000011013 ENSEMBL cdna:SNAP chromosome:CEL140:IV:232596:237450:-1 11/11 None
R02D3.4 ENSEMBL cdna:known chromosome:CEL140:IV:232536:237450:-1 gene:R02D3.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000011025 7/11 Cross Hyb Matching Probes None
GENEFINDER00000011030 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:232595-237450(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R02D3.4
Entrez Gene 176839 Entrez gene
SwissProt O44500 EMBL-EBI
WormBase CE18098 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.17545.1.S1_AT similar to Protein C12orf11 (Sarcoma antigen NY-SAR-95) cfa
DROSOPHILA_2:1631297_AT Maternal transcript 89Bb dm
DROSGENOME1:154630_AT Maternal transcript 89Bb dm
CHICKEN:GGA.12914.1.S1_AT similar to Hypothetical protein FLJ10637 gga
HG-U133_PLUS_2:221652_S_AT chromosome 12 open reading frame 11 hs
HG-U133A:221652_S_AT chromosome 12 open reading frame 11 hs
HG-U133A_2:221652_S_AT chromosome 12 open reading frame 11 hs
HU35KSUBA:RC_D59322_F_AT chromosome 12 open reading frame 11 hs
HU35KSUBA:RC_AA397916_F_AT chromosome 12 open reading frame 11 hs
HU35KSUBA:RC_AA397916_I_AT chromosome 12 open reading frame 11 hs
U133_X3P:G12751064_3P_A_AT chromosome 12 open reading frame 11 hs
HG-U95B:56315_AT chromosome 12 open reading frame 11 hs
HG-U95E:72373_AT chromosome 12 open reading frame 11 hs
MOUSE430A_2:1455076_A_AT RIKEN cDNA 4933424B01 gene mm
MOE430A:1455076_A_AT RIKEN cDNA 4933424B01 gene mm
MOUSE430_2:1455076_A_AT RIKEN cDNA 4933424B01 gene mm
MG-U74BV2:111815_S_AT RIKEN cDNA 4933424B01 gene mm
MG-U74BV2:111814_AT RIKEN cDNA 4933424B01 gene mm
MOE430A:1419211_S_AT RIKEN cDNA 4933424B01 gene mm
MOUSE430A_2:1419211_S_AT RIKEN cDNA 4933424B01 gene mm
MOUSE430_2:1419211_S_AT RIKEN cDNA 4933424B01 gene mm
MOE430B:1429811_AT RIKEN cDNA 4933424B01 gene mm
MOUSE430_2:1429811_AT RIKEN cDNA 4933424B01 gene mm
MU19KSUBA:TC17023_AT RIKEN cDNA 4933424B01 gene (4933424B01Rik), mRNA mm
MU19KSUBB:TC32828_AT RIKEN cDNA 4933424B01 gene (4933424B01Rik), mRNA mm
Protein Similarities
Method ID Description E-Value
blast AAB94145 Hypothetical protein R02D3.4 [Caenorhabditis elegans] ref|NP_499881.1| R02D3.4 [Caenorhabditis elegans] 0.0
blast CAE58516 Hypothetical protein CBG01667 [Caenorhabditis briggsae] 0.0
blast XP_791410 PREDICTED: similar to CG6814-PA, partial [Strongylocentrotus purpuratus] 2.0E-36
Sequence
Target Sequence 
>C. ELEGANS:183982_S_AT
gagagtgacatttgtggagttggctaaacatatcatgaaatatgttactttctctgaaaa
acataaggagatttataagacctatatgactacattgaatgttgataaactgttggaagt
tgatttggatgatgatgaagctgttgataaaatgttcgtgaaattctcattttttggaaa
atcggacaccgcttcaaaaaccgatgaagatgaagattccagtgatgatgaagacgagga
aatccttaaaagtccggcattgaagaaactatttggttatgtggatgcacgagatgaacg
aaaatatgaagaattatatggtcagggattcaaaaagaagaagcctgaagtcgaggagaa
gccgattgttatggcaaaagagatcaaagtggacatattctcgaatatgtgtgacatgct
tgaagtaaaagaatcgaaaattcgtcgagaattcgttggccgagaaacgcacggaaacat
tgctccactttacccacaacttgccgaaaaactggagagacctgcgagcccggctgccac
agaacgaggaactgaacgggttcggaataccgctgaacgaggaggatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAGTGACATTTGTGGAGTTGGCT 638 395 1734 Antisense
GTGGAGTTGGCTAAACATATCATGA 199 491 1747 Antisense
GAAATATGTTACTTTCTCTGAAAAA 552 363 1770 Antisense
AAGACCTATATGACTACATTGAATG 72 151 1810 Antisense
TTTGGAAAATCGGACACCGCTTCAA 308 665 1906 Antisense
GGACACCGCTTCAAAAACCGATGAA 542 525 1917 Antisense
GGAAATCCTTAAAAGTCCGGCATTG 3 527 1971 Antisense
ACTATTTGGTTATGTGGATGCACGA 24 101 2001 Antisense
TTCGTTGGCCGAGAAACGCACGGAA 619 653 2185 Antisense
TGAACGGGTTCGGAATACCGCTGAA 682 565 2286 Antisense
GGAATACCGCTGAACGAGGAGGATC 199 533 2297 Antisense
Sequence Source Affymetrix Proprietary Database