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[183981_at]

Description H37A05.2 /REP_DB=WormBase Gene ID /WP=CE19947 /TR=Q9U3D0 /GB=CAB63233.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 13      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 384
1 2 3 4 range
A 162.4
(-0.2)
P 		14.5
(-2.8)
A 		3.6
(-3)
A 		349.8
(3)
P 		346
B 241.8
(0.7)
P 		10
(-3)
A 		12
(-3)
A 		388
(3)
P 		378
C 167.4
(-0.3)
P 		7.3
(-2.9)
A 		3.9
(-3)
A 		370.7
(3)
P 		367
avr 190.5
(0) 		10.6
(-2.9) 		6.5
(-3) 		369.5
(3) 		363

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 177
1 2 3 4 5 6 range
A 102.9
(-2.8)
A 		100.3
(-3)
A 		102.2
(-2.9)
A 		132.3
(-0.5)
P 		116.4
(-1.8)
A 		178.1
(3)
P 		78
B 146.6
(0.2)
P 		121.8
(-0.7)
A 		132.6
(-0.3)
A 		53.4
(-3)
A 		158.7
(0.6)
P 		230.3
(3)
P 		177
C 93.7
(-2.4)
A 		83.7
(-3)
A 		84.8
(-2.9)
A 		91.8
(-2.5)
A 		105.9
(-1.7)
P 		190.1
(3)
P 		106
avr 114.4
(-1.8) 		101.9
(-2.5) 		106.5
(-2.2) 		92.5
(-3) 		127
(-1.1) 		199.5
(3) 		107
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 59.1
(3)
P 		3.1
(-2.8)
A 		0.9
(-3)
A 		51.2
(2.2)
P 		58
B 77.1
(2.6)
P 		2.5
(-3)
A 		2.8
(-3)
A 		82.7
(3)
P 		80
C 55.4
(2.3)
P 		2.1
(-2.9)
A 		1.4
(-3)
A 		62.5
(3)
P 		61
avr 63.9
(2.8) 		2.6
(-2.9) 		1.7
(-3) 		65.5
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 19
(-3)
A 		35.7
(1.1)
A 		22.3
(-2.2)
A 		33.6
(0.6)
P 		35.1
(1)
A 		43.4
(3)
P 		24
B 51
(0.1)
P 		40.5
(-0.8)
A 		32.2
(-1.5)
A 		14.1
(-3)
A 		64.5
(1.2)
P 		85.9
(3)
P 		72
C 34.7
(-0.8)
A 		25.5
(-2.1)
A 		21.6
(-2.6)
A 		18.5
(-3)
A 		34.3
(-0.9)
P 		63.6
(3)
P 		45
avr 34.9
(-1.2) 		33.9
(-1.3) 		25.4
(-2.5) 		22.1
(-3) 		44.6
(0.2) 		64.3
(3) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183981_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12808
Sequence Type Exemplar sequence
Representative Public ID H37A05.2 NCBI
Target Description H37A05.2 /REP_DB=WormBase Gene ID /WP=CE19947 /TR=Q9U3D0 /GB=CAB63233.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073978(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073978 NCBI Caenorhabditis elegans H37A05.2 (H37A05.2) mRNA, complete cds. 11/11 None
SNAP00000004884 ENSEMBL cdna:SNAP chromosome:CEL140:V:13632431:13635006:-1 10/11 None
GENEFINDER00000004888 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13631424:13636812:-1 11/11 None
H37A05.2 ENSEMBL cdna:known chromosome:CEL140:V:13632431:13636812:-1 gene:H37A05.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13632430-13636812(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H37A05.2
Entrez Gene 186806 Entrez gene
SwissProt Q9U3D0 EMBL-EBI
WormBase CE19947 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB63233 Hypothetical protein H37A05.2 [Caenorhabditis elegans] ref|NP_506379.1| H37A05.2 [Caenorhabditis elegans] 0.0
blast CAE66271 Hypothetical protein CBG11515 [Caenorhabditis briggsae] 1.0E-179
blast CAE66271 Hypothetical protein CBG11515 [Caenorhabditis briggsae] 1.0E-177
blast CAE66271 Hypothetical protein CBG11515 [Caenorhabditis briggsae] 1.0E-142
blast CAE75124 Hypothetical protein CBG23052 [Caenorhabditis briggsae] 1.0E-88
Protein Domains
Database ID Description E-Value
Pfam IPR004119 EMBL-EBI Protein of unknown function DUF227 1.9E-5
Sequence
Target Sequence 
>C. ELEGANS:183981_AT
gccatagtccagtcctaatgcattctgacatttggccttccaacctgctcttctctctgt
cttcagagaataagctggaattcaaagcactcattgactttcaaacagcatcactgagca
gtccgggcctggacgttggatgcctaacggtcacatgtctgtcgaaaaaggaccgtcgaa
ctgttcaatctgaaattctcgatagatattacaaatcatttgtcaaaagcctgaagactc
caaactcaattccatatactcgtgagcaactcgaagattcatatgaactttgcttcccgg
catctgtcattctaatgcttccgtttatattgtcattttctgtgaaactcggtgaaaata
tcaacgaggaatccgtagagaagatggcaggactgattgaagatctcgtaactgtgcata
actcaaatctctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCATAGTCCAGTCCTAATGCATTC 514 281 809 Antisense
CATTCTGACATTTGGCCTTCCAACC 348 217 829 Antisense
AACAGCATCACTGAGCAGTCCGGGC 682 133 912 Antisense
CAGTCCGGGCCTGGACGTTGGATGC 362 205 927 Antisense
TGCCTAACGGTCACATGTCTGTCGA 267 585 949 Antisense
AGGACCGTCGAACTGTTCAATCTGA 638 55 977 Antisense
GACTCCAAACTCAATTCCATATACT 379 375 1044 Antisense
TTCATATGAACTTTGCTTCCCGGCA 547 689 1086 Antisense
TTCCCGGCATCTGTCATTCTAATGC 116 699 1102 Antisense
GCTTCCGTTTATATTGTCATTTTCT 385 305 1125 Antisense
AACTGTGCATAACTCAAATCTCTCC 468 143 1218 Antisense
Sequence Source Affymetrix Proprietary Database