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[183980_at] 7TM chemoreceptor, srx family

Description F40H7.7 /REP_DB=WormBase Gene ID /WP=CE10208 /TR=O17092 /GB=AAF39806.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 03      6grp_cgc > 96      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 29.5
(-2.1)
A 		14.9
(-3)
A 		26.5
(-2.3)
A 		117.2
(3)
A 		102
B 41.7
(-2.3)
A 		37.2
(-3)
A 		44.5
(-1.9)
A 		75.7
(3)
A 		39
C 23.9
(-1.8)
A 		25.7
(-1.7)
A 		3.9
(-3)
A 		104.5
(3)
A 		101
avr 31.7
(-2.5) 		25.9
(-2.9) 		25
(-3) 		99.1
(3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 39.2
(0.7)
A 		22.9
(-3)
A 		49.4
(3)
A 		39.1
(0.7)
A 		49.4
(3)
A 		23.1
(-3)
A 		27
B 46.9
(1.3)
A 		45.9
(1.1)
A 		36.3
(-0.6)
A 		55.8
(3)
A 		40.6
(0.2)
A 		23.7
(-3)
A 		32
C 17.3
(-2)
A 		74.8
(3)
A 		5.3
(-3)
A 		62.1
(1.9)
A 		21.3
(-1.6)
A 		19.5
(-1.8)
A 		70
avr 34.5
(-0.5) 		47.9
(2.1) 		30.3
(-1.4) 		52.3
(3) 		37.1
(-0) 		22.1
(-3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 10.8
(0.3)
A 		3.2
(-3)
A 		6.9
(-1.4)
A 		17.2
(3)
A 		14
B 13.3
(0.6)
A 		9.2
(-3)
A 		10.3
(-2)
A 		16.1
(3)
A 		7
C 7.9
(-0.6)
A 		7.4
(-0.8)
A 		1.3
(-3)
A 		17.6
(3)
A 		16
avr 10.7
(-0.5) 		6.6
(-2.8) 		6.2
(-3) 		17
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 7.2
(-2)
A 		8.1
(-1.4)
A 		10.8
(0.4)
A 		9.9
(-0.2)
A 		14.9
(3)
A 		5.6
(-3)
A 		9
B 16.3
(2.8)
A 		15.3
(2.1)
A 		8.8
(-3)
A 		14.8
(1.7)
A 		16.5
(3)
A 		8.8
(-3)
A 		8
C 6.4
(-1.6)
A 		22.8
(3)
A 		1.3
(-3)
A 		12.5
(0.1)
A 		6.9
(-1.4)
A 		6.5
(-1.5)
A 		22
avr 10
(-0.9) 		15.4
(3) 		7
(-3) 		12.4
(0.9) 		12.8
(1.1) 		7
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183980_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4566
Sequence Type Exemplar sequence
Representative Public ID F40H7.7 NCBI
Target Description F40H7.7 /REP_DB=WormBase Gene ID /WP=CE10208 /TR=O17092 /GB=AAF39806.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062217(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062217 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-104) (srx-104) mRNA, complete cds. 9/11 None
SNAP00000031706 ENSEMBL cdna:SNAP chromosome:CEL140:II:3698593:3699685:-1 9/11 None
GENEFINDER00000031714 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3698264:3701399:-1 9/11 None
F40H7.7 ENSEMBL cdna:known chromosome:CEL140:II:3698593:3699685:-1 gene:F40H7.7 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
F40H7.11 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3697831-3699684(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srx family
Gene Symbol srx-104
Ensembl F40H7.7
Entrez Gene 185583 Entrez gene
SwissProt O17092 EMBL-EBI
WormBase CE36437 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39806 Serpentine receptor, class x protein 104 [Caenorhabditis elegans] ref|NP_494618.2| Serpentine Receptor, class X family member (srx-104) [Caenorhabditis elegans] 1.0E-137
blast AAF39806 Serpentine receptor, class x protein 104 [Caenorhabditis elegans] ref|NP_494618.2| Serpentine Receptor, class X family member (srx-104) [Caenorhabditis elegans] 1.0E-128
blast AAF39807 Serpentine receptor, class x protein 105 [Caenorhabditis elegans] ref|NP_494619.2| Serpentine Receptor, class X family member (srx-105) [Caenorhabditis elegans] 1.0E-123
blast AAF39807 Serpentine receptor, class x protein 105 [Caenorhabditis elegans] ref|NP_494619.2| Serpentine Receptor, class X family member (srx-105) [Caenorhabditis elegans] 6.0E-85
blast T32281 hypothetical protein F40H7.9 - Caenorhabditis elegans 4.0E-79
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494618.2 7 10-32,52-74,89-111,123-145,175-197,218-240,250-272
F40H7.7 7 10-32,52-74,89-111,123-145,175-197,218-240,250-272
SNAP00000031706 7 10-32,52-74,89-111,123-145,175-197,218-240,250-272
GENEFINDER00000031714 10 10-32,53-75,116-138,198-220,262-284,304-326,341-363,375-397,427-449,470-492
Sequence
Target Sequence 
>C. ELEGANS:183980_AT
tactgtagttgcgttagccttctcctgggtatttgccacgtggttctcgactttactcgg
attgccagataattgccgcgtccctgtggaccttgaacatgttggatatacaagttctga
gtgcagtgttcaagttattgattatctatttttggccgtgttcctacttggagttttcac
aaatgtcctgaacgtttccattgctatcaagctgtatttgatatcgaaatcctcaaacct
cctctcctcccgagcttcaaaaacaagaaacaaaaatcgtgtctacctgttcttacagtc
atgttttcaagattggattgcagttttggtgattttaaataatattctagcatcaatgta
ctgtcggagccatgtttgcacaaatcttatcacaatgggacttgatgtacttcatcatgt
atttgttcaactgcaaattcaagccaaaatgaaaatgcctatgaatcttcgtgttcttca
aagcttttgcaaacagaaaatttcaagtttttatcttatgtgctcttctaaaactctatc
catcatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACTGTAGTTGCGTTAGCCTTCTCC 110 575 381 Antisense
GGTTCTCGACTTTACTCGGATTGCC 190 505 422 Antisense
GGATTGCCAGATAATTGCCGCGTCC 307 509 439 Antisense
GTCCCTGTGGACCTTGAACATGTTG 37 477 460 Antisense
ATCTATTTTTGGCCGTGTTCCTACT 338 31 524 Antisense
TGTCCTGAACGTTTCCATTGCTATC 110 557 564 Antisense
AAATCGTGTCTACCTGTTCTTACAG 442 117 654 Antisense
CTAGCATCAATGTACTGTCGGAGCC 254 225 727 Antisense
GTCGGAGCCATGTTTGCACAAATCT 89 473 743 Antisense
ATGCCTATGAATCTTCGTGTTCTTC 570 41 835 Antisense
CTCTTCTAAAACTCTATCCATCATG 54 229 903 Antisense
Sequence Source Affymetrix Proprietary Database