[Home] | [Total List]

[183979_at]

Description B0432.1 /REP_DB=WormBase Gene ID /WP=CE07739 /TR=P90997 /GB=AAB37898.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 07      4grp_total > 17      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 209
1 2 3 4 range
A 66
(-2.8)
A 		89.3
(-1.4)
P 		62.4
(-3)
A 		162.1
(3)
M 		100
B 46.6
(-3)
A 		79.7
(-1.9)
A 		84.4
(-1.8)
A 		233.2
(3)
P 		187
C 24
(-3)
A 		72
(-1)
A 		84.8
(-0.5)
A 		168.8
(3)
P 		145
avr 45.5
(-3) 		80.3
(-1.5) 		77.2
(-1.7) 		188
(3) 		143

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 118.3
(3)
A 		88.9
(-0.2)
A 		62.9
(-3)
A 		70.6
(-2.2)
A 		66.6
(-2.6)
A 		78.3
(-1.3)
A 		55
B 107.1
(3)
A 		103.4
(2.5)
A 		81.6
(-0.3)
A 		73.4
(-1.3)
A 		63.7
(-2.6)
A 		60.5
(-3)
A 		47
C 76
(3)
A 		56.9
(-0.4)
A 		62.2
(0.5)
A 		74.2
(2.7)
A 		42.4
(-3)
A 		52.6
(-1.2)
A 		34
avr 100.5
(3) 		83.1
(0.6) 		68.9
(-1.4) 		72.7
(-0.9) 		57.6
(-3) 		63.8
(-2.1) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 24
(3)
A 		19.4
(-0.6)
P 		16.3
(-3)
A 		23.7
(2.8)
M 		8
B 14.8
(-3)
A 		19.7
(-2.2)
A 		19.6
(-2.2)
A 		49.7
(3)
P 		35
C 7.9
(-3)
A 		20.7
(0.6)
A 		29.5
(3)
A 		28.5
(2.7)
P 		22
avr 15.6
(-3) 		19.9
(-1.6) 		21.8
(-1) 		34
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 21.8
(-0.3)
A 		31.6
(3)
A 		13.7
(-3)
A 		17.9
(-1.6)
A 		20.1
(-0.9)
A 		19.1
(-1.2)
A 		18
B 37.3
(3)
A 		34.4
(2)
A 		19.8
(-2.9)
A 		19.4
(-3)
A 		25.9
(-0.8)
A 		22.5
(-2)
A 		18
C 28.2
(3)
A 		17.4
(-1.5)
A 		15.8
(-2.1)
A 		14.9
(-2.5)
A 		13.7
(-3)
A 		17.6
(-1.4)
A 		15
avr 29.1
(3) 		27.8
(2.4) 		16.4
(-3) 		17.4
(-2.5) 		19.9
(-1.3) 		19.7
(-1.4) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183979_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5327
Sequence Type Exemplar sequence
Representative Public ID B0432.1 NCBI
Target Description B0432.1 /REP_DB=WormBase Gene ID /WP=CE07739 /TR=P90997 /GB=AAB37898.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061298(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061298 NCBI Caenorhabditis elegans B0432.1 (B0432.1) mRNA, complete cds. 11/11 None
SNAP00000016831 ENSEMBL cdna:SNAP chromosome:CEL140:II:298665:299734:1 9/11 None
GENEFINDER00000016849 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:297398:299526:1 11/11 None
B0432.1 ENSEMBL cdna:known chromosome:CEL140:II:297398:299526:1 gene:B0432.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000016830 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:297397-299526(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0432.1
Entrez Gene 181987 Entrez gene
SwissProt P90997 EMBL-EBI
WormBase CE07739 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37898 Hypothetical protein B0432.1 [Caenorhabditis elegans] ref|NP_493699.1| B0432.1 [Caenorhabditis elegans] 1.0E-148
blast AAB37898 Hypothetical protein B0432.1 [Caenorhabditis elegans] ref|NP_493699.1| B0432.1 [Caenorhabditis elegans] 1.0E-104
blast CAE62863 Hypothetical protein CBG07046 [Caenorhabditis briggsae] 1.0E-42
blast CAE62863 Hypothetical protein CBG07046 [Caenorhabditis briggsae] 4.0E-30
blast AAC69506 Hypothetical protein K01A2.6 [Caenorhabditis elegans] ref|NP_493700.1| K01A2.6 [Caenorhabditis elegans] 1.0E-19
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493699.1 6 22-44,64-83,98-120,141-160,182-204,225-243
B0432.1 6 22-44,64-83,98-120,141-160,182-204,225-243
SNAP00000016831 6 13-32,42-64,85-104,126-148,169-186,206-225
GENEFINDER00000016849 6 22-44,64-83,98-120,141-160,182-204,225-243
Sequence
Target Sequence 
>C. ELEGANS:183979_AT
tgctccgttttaccggatcttctattacatcggaatcgccgatgttctccactgcatctg
tctcttctggatgacatttcaaaagtatgtcatccatggggacattctcggttatgtgac
tcgtatggcaagcatcggaacctgtgtcctctacctactgaacatcgctggtggtgctat
tatggcagtcaatagatactttgcaaccttcatcacgttccataactcattctccaaaag
aaacattaaattaatcttgtcattgtccactgttggagctgcagtctgctcaatcccctc
aatggtttgccacagagtttggagttgggatggaagtgcatggaaatattcaactgaacc
tgcttacatgggaattatccaaagatatatcatcattgcctggcttataattttcctaac
tatcacctacgtctacattttcatgacaagtttccgaatccgagagtttccaagaaatga
gcgataccacaaaaatgatcataccctgctctacttcatcatcatccactcctttttcca
attctggatgcttatgtacgagctcttcgaggcattcact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTCCGTTTTACCGGATCTTCTAT 702 581 183 Antisense
ATCGGAATCGCCGATGTTCTCCACT 258 35 211 Antisense
TGGCAAGCATCGGAACCTGTGTCCT 123 547 308 Antisense
CCTCTACCTACTGAACATCGCTGGT 703 267 330 Antisense
GATACTTTGCAACCTTCATCACGTT 684 423 377 Antisense
TCATCACGTTCCATAACTCATTCTC 221 619 392 Antisense
TTGGAGCTGCAGTCTGCTCAATCCC 676 705 455 Antisense
GATATATCATCATTGCCTGGCTTAT 301 427 566 Antisense
TTCCTAACTATCACCTACGTCTACA 100 697 595 Antisense
AAAAATGATCATACCCTGCTCTACT 654 129 673 Antisense
GTACGAGCTCTTCGAGGCATTCACT 117 459 738 Antisense
Sequence Source Affymetrix Proprietary Database