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[183978_at]

Description B0212.1 /REP_DB=WormBase Gene ID /WP=CE16767 /TR=O45067 /GB=AAC02566.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 33      4grp_highest_8_8 > 03      4grp_high_8_8 > 46      6grp_highest_nonorm > 90      6grp_total > 02      4grp_total > 49      6grp_highest_sub > 02      6grp_high1_sub > 02      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 113.1
(-3)
P 		188.8
(3)
P 		173.7
(1.8)
P 		142.3
(-0.7)
P 		76
B 94.2
(-1.9)
P 		181.5
(3)
P 		172.4
(2.5)
P 		74.1
(-3)
P 		107
C 86.1
(-3)
P 		177.6
(3)
P 		134.8
(0.2)
P 		145.6
(0.9)
P 		92
avr 97.8
(-3) 		182.6
(3) 		160.3
(1.4) 		120.7
(-1.4) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 128.3
(3)
P 		118.7
(1.6)
P 		107.6
(-0)
P 		94.5
(-1.9)
P 		124.8
(2.5)
P 		86.9
(-3)
P 		41
B 133.2
(-0.3)
P 		194.5
(3)
P 		118.9
(-1)
P 		162.7
(1.3)
P 		151.4
(0.7)
P 		82.3
(-3)
P 		112
C 117.1
(-1)
P 		180.3
(3)
P 		124.2
(-0.5)
P 		112.5
(-1.3)
P 		138.1
(0.3)
P 		85.3
(-3)
P 		95
avr 126.2
(0.1) 		164.5
(3) 		116.9
(-0.6) 		123.2
(-0.1) 		138.1
(1) 		84.8
(-3) 		80
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 41.2
(2)
P 		41
(1.9)
P 		45.4
(3)
P 		20.8
(-3)
P 		25
B 30.1
(-0)
P 		44.8
(3)
P 		39.9
(2)
P 		15.8
(-3)
P 		29
C 28.5
(-2.1)
P 		51.1
(3)
P 		47
(2.1)
P 		24.5
(-3)
P 		27
avr 33.3
(0.1) 		45.6
(3) 		44.1
(2.6) 		20.4
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 23.7
(-2.3)
P 		42.2
(3)
P 		23.4
(-2.4)
P 		24
(-2.2)
P 		37.7
(1.7)
P 		21.2
(-3)
P 		21
B 46.4
(-0.1)
P 		64.8
(3)
P 		28.9
(-3)
P 		43.1
(-0.6)
P 		61.5
(2.4)
P 		30.7
(-2.7)
P 		36
C 43.4
(0.9)
P 		55
(3)
P 		31.6
(-1.3)
P 		22.6
(-3)
P 		44.7
(1.1)
P 		28.6
(-1.9)
P 		32
avr 37.8
(-0.6) 		54
(3) 		28
(-2.7) 		29.9
(-2.3) 		48
(1.7) 		26.8
(-3) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183978_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11195
Sequence Type Exemplar sequence
Representative Public ID B0212.1 NCBI
Target Description B0212.1 /REP_DB=WormBase Gene ID /WP=CE16767 /TR=O45067 /GB=AAC02566.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067973(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067973 NCBI Caenorhabditis elegans B0212.1 (B0212.1) mRNA, complete cds. 11/11 None
SNAP00000040984 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3568921:3577556:1 10/11 None
GENEFINDER00000040988 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3565207:3577667:1 11/11 None
B0212.1 ENSEMBL cdna:known chromosome:CEL140:IV:3572490:3577625:1 gene:B0212.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3572495-3577631(+) 99.33 100.0
Public Domain and Genome References
Gene Title
Ensembl B0212.1
Entrez Gene 181841 Entrez gene
SwissProt O45067 EMBL-EBI
WormBase CE16767 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1627920_AT dm
DROSGENOME1:144531_AT dm
Protein Similarities
Method ID Description E-Value
blast AAC02566 Hypothetical protein B0212.1 [Caenorhabditis elegans] ref|NP_500374.1| B0212.1 [Caenorhabditis elegans] 0.0
blast CAE63792 Hypothetical protein CBG08333 [Caenorhabditis briggsae] 0.0
blast E88651 protein B0212.2 [imported] - Caenorhabditis elegans 0.0
blast AAL02486 Hypothetical protein F14B8.7 [Caenorhabditis elegans] ref|NP_509170.1| F14B8.7 [Caenorhabditis elegans] 2.0E-86
Protein Domains
Database ID Description E-Value
Pfam IPR004878 EMBL-EBI Protein of unknown function DUF270 1.0E-126
Pfam IPR004878 EMBL-EBI Protein of unknown function DUF270 1.0E-126
Pfam IPR004878 EMBL-EBI Protein of unknown function DUF270 1.0E-126
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 1.2E-19
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500374.1 10 54-73,93-115,200-222,232-254,266-288,364-386,411-433,443-465,490-512,522-544
B0212.1 10 54-73,93-115,200-222,232-254,266-288,364-386,411-433,443-465,490-512,522-544
SNAP00000040984 10 146-165,185-207,258-280,290-312,324-346,422-444,469-491,501-523,548-570,580-602
GENEFINDER00000040988 15 32-54,114-136,146-168,175-194,229-251,264-286,615-637,650-672,725-747,754-776,888-910,935-957,967-989,1014-1036,1046-1068
Sequence
Target Sequence 
>C. ELEGANS:183978_AT
gttcgtctacgcgtttactgacatgtttcagtacgtcctctcaacaatcggagttctcac
cgctatctatcaaatgcgagctctcaaatatttcaataaaaagacgaaattacaaaattc
ggatcaagaactgttggatcaaattttgctttcaattggtttagtcggagagctaattta
ttccgtagctggactcgtcgggctcaccggagagaagcagtggaccaatttttcatttat
cttgctttttgtgcatatttttaggcttattcaggttggcacccaaacgttcctattaca
cgtggcaagaagtgtccgaatgggatgtgagcatcgagaggctcaacctggaaagcaggc
gattacgtttttgctcactgcgaatttagccatatttttcatgaatttatttgaaagtga
aaaagcgggagtttctgagatgatcattgaatactacggaaagcgctcgtgggtcttcct
tgtgcgaagcttctccccactcaccattttctaccgattccacagctctgtgtgcttcgc
cgagatctggaaaaacgtatacgctgctaaaactcatctggtgcacaactcggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCGTCTACGCGTTTACTGACATG 465 441 1338 Antisense
TTTCAGTACGTCCTCTCAACAATCG 81 671 1363 Antisense
CAATCGGAGTTCTCACCGCTATCTA 621 179 1382 Antisense
TTATTCCGTAGCTGGACTCGTCGGG 589 673 1515 Antisense
CTCGTCGGGCTCACCGGAGAGAAGC 86 233 1531 Antisense
GGCTTATTCAGGTTGGCACCCAAAC 155 535 1601 Antisense
GCACCCAAACGTTCCTATTACACGT 653 313 1616 Antisense
CGATTACGTTTTTGCTCACTGCGAA 673 247 1697 Antisense
TACGGAAAGCGCTCGTGGGTCTTCC 458 645 1792 Antisense
GATTCCACAGCTCTGTGTGCTTCGC 580 433 1853 Antisense
AAACTCATCTGGTGCACAACTCGGC 23 129 1907 Antisense
Sequence Source Affymetrix Proprietary Database