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[183977_at]

Description C50C10.6 /REP_DB=WormBase Gene ID /WP=CE05464 /TR=Q18732 /GB=CAA96611.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 03      6grp_cgc > 73      6grp_cgc_sub > 02_03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 29.2
(-1.7)
A 		12.5
(-3)
A 		26.9
(-1.9)
A 		90.5
(3)
P 		78
B 19.4
(-2.2)
A 		37
(0.8)
A 		14.7
(-3)
A 		50.1
(3)
P 		35
C 40.5
(-0.8)
A 		17.1
(-2.2)
A 		3.1
(-3)
A 		107.2
(3)
P 		104
avr 29.7
(-1.7) 		22.2
(-2.4) 		14.9
(-3) 		82.6
(3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 7.7
(-1.8)
A 		3.6
(-2.9)
A 		27.5
(3)
A 		3.1
(-3)
A 		12.9
(-0.6)
A 		3
(-3)
A 		25
B 3.3
(-2.9)
A 		21.8
(1.5)
A 		27.8
(3)
A 		3.9
(-2.8)
A 		24.4
(2.2)
A 		3
(-3)
A 		25
C 12.8
(-2.1)
A 		40.7
(2.9)
A 		9
(-2.8)
A 		41.5
(3)
A 		7.7
(-3)
A 		18.4
(-1.1)
A 		34
avr 7.9
(-3) 		22
(3) 		21.4
(2.7) 		16.2
(0.5) 		15
(0) 		8.1
(-2.9) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 10.6
(1.5)
A 		2.7
(-3)
A 		7
(-0.6)
A 		13.3
(3)
P 		11
B 6.2
(-0.7)
A 		9.1
(1.7)
A 		3.4
(-3)
A 		10.7
(3)
P 		7
C 13.4
(1.3)
A 		4.9
(-1.7)
A 		1.1
(-3)
A 		18.1
(3)
P 		17
avr 10.1
(0.7) 		5.6
(-1.9) 		3.8
(-3) 		14
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.4
(-2.2)
A 		1.3
(-2.3)
A 		6
(3)
A 		0.8
(-2.9)
A 		3.9
(0.6)
A 		0.7
(-3)
A 		5
B 1.1
(-2.9)
A 		7.3
(1.2)
A 		6.8
(0.9)
A 		1
(-3)
A 		9.9
(3)
A 		1.1
(-2.9)
A 		9
C 4.7
(-1.6)
A 		12.4
(3)
A 		2.3
(-3)
A 		8.4
(0.6)
A 		2.5
(-2.9)
A 		6.2
(-0.7)
A 		10
avr 2.4
(-3) 		7
(3) 		5
(0.4) 		3.4
(-1.7) 		5.4
(0.9) 		2.7
(-2.6) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183977_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11957
Sequence Type Exemplar sequence
Representative Public ID C50C10.6 NCBI
Target Description C50C10.6 /REP_DB=WormBase Gene ID /WP=CE05464 /TR=Q18732 /GB=CAA96611.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073135(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073135 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-193) (str-193) mRNA, complete cds. 11/11 None
SNAP00000003332 ENSEMBL cdna:SNAP chromosome:CEL140:V:9823136:9824406:-1 11/11 None
GENEFINDER00000003337 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9823136:9826831:-1 11/11 None
C50C10.6 ENSEMBL cdna:known chromosome:CEL140:V:9823136:9824406:-1 gene:C50C10.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9823135-9824406(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol str-193
Ensembl C50C10.6
Entrez Gene 183649 Entrez gene
SwissProt Q18732 EMBL-EBI
WormBase CE05464 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA96611 Hypothetical protein C50C10.6 [Caenorhabditis elegans] ref|NP_505536.1| Seven TM Receptor family member (str-193) [Caenorhabditis elegans] 0.0
blast CAA96613 Hypothetical protein C50C10.7 [Caenorhabditis elegans] ref|NP_741602.1| Seven TM Receptor family member (str-2) [Caenorhabditis elegans] gb|AAF23508.1| seven transmembrane receptor 2 [Caenorhabditis elegans] 0.0
blast CAE72264 Hypothetical protein CBG19383 [Caenorhabditis briggsae] 1.0E-149
blast CAE72263 Hypothetical protein CBG19382 [Caenorhabditis briggsae] 1.0E-115
blast CAE72264 Hypothetical protein CBG19383 [Caenorhabditis briggsae] 1.0E-104
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 6.7E-6
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 3.0E-6
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 3.4E-15
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.5E-8
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 6.7E-6
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 3.0E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505536.1 7 15-34,55-77,90-112,132-154,201-223,254-276,286-308
C50C10.6 7 15-34,55-77,90-112,132-154,201-223,254-276,286-308
SNAP00000003332 7 15-34,55-77,90-112,132-154,201-223,254-276,286-308
GENEFINDER00000003337 15 15-34,55-77,92-114,135-157,203-225,257-279,289-311,386-403,425-447,460-482,502-524,545-559,574-596,624-646,656-678
Sequence
Target Sequence 
>C. ELEGANS:183977_AT
gggattgtttgttcggtttattgtggggaaacacctgaaagatctgactacttgaggaaa
aatatgatggataattaccgcttaagaattgaagacgttgggtacatcagtgctaattat
tggccaatggggaaaaatggaacagtgagaccagatttcgactcatttttcggaactttt
ttgatgtggattattgtgggagcatctattggcagcgtcctctacttcggaattggatgt
tatcgttggatatcacaccaattgaaaattgtcgaaacccaatcgaacactgtgaaatcc
cttcaaaaacaattattttatgcacttgtagtacaatcagcaattccaagtgttctcatg
tacttccctatcagcatggcattcatttttccaatgctaaacattgaattaaacctcaaa
tatccatttattggactaacaatcgctgtttatccagctattgatccacttccttctctc
ttgatcattagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGATTGTTTGTTCGGTTTATTGTG 160 497 448 Antisense
GAAACACCTGAAAGATCTGACTACT 116 357 475 Antisense
GAAGACGTTGGGTACATCAGTGCTA 603 339 538 Antisense
GACCAGATTTCGACTCATTTTTCGG 501 381 596 Antisense
TGGGAGCATCTATTGGCAGCGTCCT 242 553 644 Antisense
AGCGTCCTCTACTTCGGAATTGGAT 707 81 661 Antisense
GAAACCCAATCGAACACTGTGAAAT 26 359 721 Antisense
TCCAAGTGTTCTCATGTACTTCCCT 441 587 792 Antisense
GTACTTCCCTATCAGCATGGCATTC 577 459 807 Antisense
CTGTTTATCCAGCTATTGATCCACT 96 239 893 Antisense
CTTCCTTCTCTCTTGATCATTAGAA 569 219 916 Antisense
Sequence Source Affymetrix Proprietary Database