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[183973_at]

Description F17E9.2 /REP_DB=WormBase Gene ID /WP=CE17023 /TR=O61524 /GB=AAC05111.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 45      4grp_total > 27      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 11.9
(-3)
A 		17.4
(-1.5)
A 		25.9
(0.9)
A 		33.6
(3)
A 		22
B 26.8
(1.2)
P 		34.6
(3)
P 		9.3
(-3)
A 		19.2
(-0.7)
A 		25
C 18.3
(-1.5)
A 		27.9
(1.4)
A 		13.3
(-3)
A 		33
(3)
A 		20
avr 19
(-1.6) 		26.6
(2) 		16.2
(-3) 		28.6
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 25.4
(3)
A 		9.1
(-2.2)
A 		11.1
(-1.5)
A 		6.5
(-3)
A 		18.4
(0.8)
A 		12.2
(-1.2)
A 		19
B 11.9
(-0.7)
A 		12.8
(-0.5)
A 		29.6
(3)
P 		1.1
(-3)
A 		15.7
(0.1)
A 		22.3
(1.5)
A 		29
C 25.3
(-0.6)
A 		41.4
(3)
P 		14.3
(-3)
A 		24.1
(-0.8)
A 		19.2
(-1.9)
A 		24.4
(-0.8)
A 		27
avr 20.9
(2.9) 		21.1
(3) 		18.3
(1.4) 		10.6
(-3) 		17.8
(1.1) 		19.6
(2.1) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 4.3
(-2)
A 		3.8
(-3)
A 		6.8
(3)
A 		4.9
(-0.8)
A 		3
B 8.6
(3)
P 		8.6
(3)
P 		2.2
(-3)
A 		4.1
(-1.2)
A 		6
C 6.1
(-0.4)
A 		8
(3)
A 		4.6
(-3)
A 		5.6
(-1.2)
A 		3
avr 6.3
(1.7) 		6.8
(3) 		4.5
(-3) 		4.9
(-2) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 4.7
(1.7)
A 		3.2
(-0.6)
A 		2.4
(-1.9)
A 		1.7
(-3)
A 		5.5
(3)
A 		3
(-0.9)
A 		4
B 4.1
(-0.2)
A 		4.3
(0)
A 		7.2
(2.2)
P 		0.3
(-3)
A 		6.4
(1.6)
A 		8.3
(3)
A 		8
C 9.4
(0.9)
A 		12.6
(3)
P 		3.6
(-3)
A 		4.8
(-2.2)
A 		6.2
(-1.3)
A 		8.2
(0.1)
A 		9
avr 6.1
(2.2) 		6.7
(3) 		4.4
(-0.1) 		2.3
(-3) 		6
(2) 		6.5
(2.7) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183973_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9113
Sequence Type Exemplar sequence
Representative Public ID F17E9.2 NCBI
Target Description F17E9.2 /REP_DB=WormBase Gene ID /WP=CE17023 /TR=O61524 /GB=AAC05111.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069014(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069014 NCBI Caenorhabditis elegans F17E9.2 (F17E9.2) mRNA, complete cds. 11/11 None
F17E9.2 ENSEMBL cdna:known chromosome:CEL140:IV:8355889:8356485:1 gene:F17E9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8355894-8356491(+) 94.28 100.0
Public Domain and Genome References
Gene Title
Ensembl F17E9.2
Entrez Gene 184618 Entrez gene
SwissProt O61524 EMBL-EBI
WormBase CE17023 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC05111 Hypothetical protein F17E9.2 [Caenorhabditis elegans] ref|NP_501415.1| F17E9.2 [Caenorhabditis elegans] 1.0E-100
blast NP_501417 D2096.5 [Caenorhabditis elegans] gb|AAA81489.2| Hypothetical protein D2096.5 [Caenorhabditis elegans] 1.0E-17
blast NP_501425 D2096.10 [Caenorhabditis elegans] gb|AAA81497.2| Hypothetical protein D2096.10 [Caenorhabditis elegans] 2.0E-12
Sequence
Target Sequence 
>C. ELEGANS:183973_AT
tgattcgatttttctttagttttcttttcattcattcttgtactccgcttttgggcgatg
atgtcacaaaatttcattttactggaacactgagctgtatatctaatagtggatcttcaa
ttccatttgtagtttggagacttggagtatgggaagaagatggattgattgatgatcatt
taggagatacttttctgttctttctgtcagaagcaggagcattctacaaaattgacgttc
aggatgatggagatggaccaaatgaaaatttctacagaatatactataaaatcgaacata
attgcacgtattcaggaaaagtaaaagattcaaaagtttttgtgacgattttttggaatt
tcccagggtataaaggtttttttgttttccatagtgtaaaatttcagagatactttttac
aaaaaggatataaatttattaacaactcacgaatgaggtgttgttatttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATTCGATTTTTCTTTAGTTTTCT 580 563 14 Antisense
ATTCTTGTACTCCGCTTTTGGGCGA 473 7 47 Antisense
CCGCTTTTGGGCGATGATGTCACAA 330 263 58 Antisense
AAAATTTCATTTTACTGGAACACTG 38 129 81 Antisense
GGAACACTGAGCTGTATATCTAATA 294 529 97 Antisense
AATAGTGGATCTTCAATTCCATTTG 504 171 118 Antisense
GAGATACTTTTCTGTTCTTTCTGTC 676 395 197 Antisense
GTCAGAAGCAGGAGCATTCTACAAA 710 463 219 Antisense
GACGTTCAGGATGATGGAGATGGAC 448 377 247 Antisense
CGAACATAATTGCACGTATTCAGGA 206 253 306 Antisense
CTCACGAATGAGGTGTTGTTATTTT 132 227 459 Antisense
Sequence Source Affymetrix Proprietary Database