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[183972_at]

Description D1005.3 /REP_DB=WormBase Gene ID /WP=CE06999 /TR=Q18909 /GB=AAB00581.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 16      4grp_total > 50      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 66.6
(-0.6)
A 		94.8
(3)
A 		94.7
(3)
A 		47.2
(-3)
A 		48
B 81
(-3)
A 		105
(0.1)
A 		128
(3)
A 		81.4
(-2.9)
A 		47
C 61.2
(-3)
A 		153.8
(3)
A 		71.1
(-2.4)
A 		91.4
(-1)
A 		93
avr 69.6
(-3) 		117.9
(3) 		97.9
(0.5) 		73.3
(-2.5) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 113.5
(3)
A 		42.7
(-1.4)
A 		29.8
(-2.3)
A 		50.8
(-0.9)
A 		18
(-3)
A 		51.1
(-0.9)
A 		96
B 104.4
(3)
A 		73.7
(0.7)
A 		24.3
(-3)
A 		36.4
(-2.1)
A 		52.1
(-0.9)
A 		33.9
(-2.3)
M 		80
C 49.3
(-0.5)
A 		68.5
(3)
A 		68.3
(3)
A 		64.4
(2.3)
A 		50.6
(-0.3)
A 		35.6
(-3)
A 		33
avr 89.1
(3) 		61.6
(-0.4) 		40.8
(-2.9) 		50.5
(-1.7) 		40.2
(-3) 		40.2
(-3) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 24.3
(2.8)
A 		20.6
(1.6)
A 		24.8
(3)
A 		6.9
(-3)
A 		18
B 25.8
(1.1)
A 		25.9
(1.2)
A 		29.7
(3)
A 		17.3
(-3)
A 		12
C 20.3
(-2)
A 		44.2
(3)
A 		24.8
(-1)
A 		15.4
(-3)
A 		29
avr 23.5
(0.6) 		30.2
(3) 		26.4
(1.7) 		13.2
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 20.9
(3)
A 		15.2
(0.8)
A 		6.5
(-2.6)
A 		12.9
(-0.1)
A 		5.4
(-3)
A 		12.5
(-0.3)
A 		16
B 36.3
(3)
A 		24.5
(0.7)
A 		5.9
(-3)
A 		9.6
(-2.3)
A 		21.2
(0)
A 		12.6
(-1.7)
M 		30
C 18.3
(1.3)
A 		20.9
(3)
A 		17.4
(0.7)
A 		12.9
(-2.3)
A 		16.4
(-0)
A 		11.9
(-3)
A 		9
avr 25.2
(3) 		20.2
(1) 		9.9
(-3) 		11.8
(-2.3) 		14.3
(-1.3) 		12.3
(-2.1) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183972_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18400
Sequence Type Exemplar sequence
Representative Public ID D1005.3 NCBI
Target Description D1005.3 /REP_DB=WormBase Gene ID /WP=CE06999 /TR=Q18909 /GB=AAB00581.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075875(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075875 NCBI Caenorhabditis elegans D1005.3 (D1005.3) mRNA, complete cds. 11/11 None
SNAP00000027961 ENSEMBL cdna:SNAP chromosome:CEL140:X:1452796:1453853:-1 11/11 None
GENEFINDER00000027969 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1452800:1454023:-1 11/11 None
D1005.3 ENSEMBL cdna:known chromosome:CEL140:X:1452690:1454023:-1 gene:D1005.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1452795-1454023(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D1005.3
Entrez Gene 180481 Entrez gene
SwissProt Q18909 EMBL-EBI
WormBase CE06999 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB00581 Hypothetical protein D1005.3 [Caenorhabditis elegans] ref|NP_508276.1| D1005.3 [Caenorhabditis elegans] 0.0
blast AAK21516 Hypothetical protein Y44E3B.1a [Caenorhabditis elegans] ref|NP_491132.1| Y44E3B.1a [Caenorhabditis elegans] 2.0E-96
blast AAK21516 Hypothetical protein Y44E3B.1a [Caenorhabditis elegans] ref|NP_491132.1| Y44E3B.1a [Caenorhabditis elegans] 9.0E-96
blast AAK68487 Hypothetical protein Y44E3B.1b [Caenorhabditis elegans] ref|NP_491133.1| Y44E3B.1b [Caenorhabditis elegans] 9.0E-94
blast AAK68487 Hypothetical protein Y44E3B.1b [Caenorhabditis elegans] ref|NP_491133.1| Y44E3B.1b [Caenorhabditis elegans] 1.0E-93
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508276.1 1 7-26
D1005.3 1 7-26
GENEFINDER00000027969 1 7-26
Sequence
Target Sequence 
>C. ELEGANS:183972_AT
gagcatccttacgaacaaccggagctgaacggatatgagcgccacgtggcgtacggcact
ggctatcgagtgcctggggattatgatcaggatgggtacaagatgaattgtgaagtgaaa
gctgagacaccggatttcggagctaccaagacccgccgagctgtcaaacgcccagttcct
tatgacgattaccagaaggaatactcggaggagtccagcgatatgacggataacgacgga
agcgttgacgactcctactttgagccaaagagcaagaaaactaaatccgccggactggaa
aacttcaagccacagaccagagcaagaaagtacaaactcaaggcagacgaggagaaggct
gagccgacctacaaattgaaaagagcccggaacaatgatgccgtcagaaaatcgcgtaaa
aaggcaaaggagctccaggacaagaaggaagccgagcacgacaagatgaagaggcgcatc
gccgagcttgaagggctcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCATCCTTACGAACAACCGGAGC 625 385 466 Antisense
AACGGATATGAGCGCCACGTGGCGT 578 141 493 Antisense
GGCTATCGAGTGCCTGGGGATTATG 552 537 526 Antisense
GGATTTCGGAGCTACCAAGACCCGC 583 507 597 Antisense
GCCCAGTTCCTTATGACGATTACCA 472 285 635 Antisense
TTGACGACTCCTACTTTGAGCCAAA 171 705 710 Antisense
GCAAGAAAACTAAATCCGCCGGACT 21 315 737 Antisense
GAAAACTTCAAGCCACAGACCAGAG 435 355 763 Antisense
GAAGGCTGAGCCGACCTACAAATTG 100 333 819 Antisense
AAGAGCCCGGAACAATGATGCCGTC 579 153 846 Antisense
GCATCGCCGAGCTTGAAGGGCTCCT 704 307 941 Antisense
Sequence Source Affymetrix Proprietary Database