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[183970_at]

Description T04C12.3 /REP_DB=WormBase Gene ID /WP=CE13146 /TR=O45745 /GB=CAB04677.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 22      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 15      6grp_total > 22      4grp_total > 12      6grp_highest_sub > 02      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5764
1 2 3 4 range
A 5085.9
(-0.8)
P 		4015.4
(-2)
P 		3074
(-3)
P 		8663
(3)
P 		5589
B 5102.9
(0)
P 		4141.9
(-1.3)
P 		2899.3
(-3)
P 		7250.3
(3)
P 		4351
C 4788.7
(-1)
P 		4391
(-1.4)
P 		2955.1
(-3)
P 		8464.7
(3)
P 		5510
avr 4992.5
(-0.7) 		4182.8
(-1.6) 		2976.1
(-3) 		8126
(3) 		5150

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4111
1 2 3 4 5 6 range
A 5336.7
(1.1)
P 		5765.4
(1.7)
P 		6576.6
(3)
P 		5772.7
(1.8)
P 		3673.6
(-1.5)
P 		2706.2
(-3)
P 		3870
B 5610
(1.1)
P 		6817.6
(3)
P 		5652.2
(1.2)
P 		4748.8
(-0.3)
P 		4527.5
(-0.6)
P 		3017.3
(-3)
P 		3800
C 5455.7
(1.8)
P 		5982.2
(2.8)
P 		4938.1
(0.9)
P 		6097.3
(3)
P 		3810.8
(-1.2)
P 		2807.1
(-3)
P 		3290
avr 5467.5
(1.7) 		6188.4
(3) 		5722.3
(2.2) 		5539.6
(1.8) 		4004
(-0.9) 		2843.5
(-3) 		3345
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1180
1 2 3 4 range
A 1851.8
(3)
P 		871.6
(-2.6)
P 		803.6
(-3)
P 		1268.1
(-0.3)
P 		1048
B 1627.3
(3)
P 		1023
(-0.8)
P 		671.8
(-3)
P 		1545
(2.5)
P 		956
C 1585.2
(3)
P 		1262.4
(-0.5)
P 		1029.9
(-3)
P 		1427.3
(1.3)
P 		555
avr 1688.1
(3) 		1052.3
(-1.5) 		835.1
(-3) 		1413.5
(1.1) 		853

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1610
1 2 3 4 5 6 range
A 983.8
(-1.6)
P 		2050.4
(3)
P 		1432.2
(0.3)
P 		1464.1
(0.5)
P 		1108.5
(-1.1)
P 		658.9
(-3)
P 		1392
B 1952
(1.3)
P 		2269.3
(3)
P 		1372.5
(-1.7)
P 		1257.8
(-2.3)
P 		1839.5
(0.7)
P 		1125.1
(-3)
P 		1144
C 2022.2
(3)
P 		1825.3
(1.9)
P 		1256.8
(-1.2)
P 		1226.2
(-1.4)
P 		1233.1
(-1.4)
P 		939.7
(-3)
P 		1083
avr 1652.7
(0.9) 		2048.3
(3) 		1353.8
(-0.7) 		1316
(-0.9) 		1393.7
(-0.4) 		907.9
(-3) 		1140
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183970_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13410
Sequence Type Exemplar sequence
Representative Public ID T04C12.3 NCBI
Target Description T04C12.3 /REP_DB=WormBase Gene ID /WP=CE13146 /TR=O45745 /GB=CAB04677.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073415(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073415 NCBI Caenorhabditis elegans T04C12.3 (T04C12.3) mRNA, complete cds. 11/11 None
SNAP00000040053 ENSEMBL cdna:SNAP chromosome:CEL140:V:11067842:11068199:-1 11/11 None
GENEFINDER00000040064 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11067842:11068199:-1 11/11 None
T04C12.3.2 ENSEMBL cdna:known chromosome:CEL140:V:11067328:11068201:-1 gene:T04C12.3 11/11 None
T04C12.3.1 ENSEMBL cdna:known chromosome:CEL140:V:11067550:11068203:-1 gene:T04C12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11067841-11068199(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T04C12.3
Entrez Gene 179532 Entrez gene
SwissProt O45745 EMBL-EBI
WormBase CE13146 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04677 Hypothetical protein T04C12.3 [Caenorhabditis elegans] ref|NP_505816.1| T04C12.3 [Caenorhabditis elegans] 1.0E-30
blast CAE75156 Hypothetical protein CBG23093 [Caenorhabditis briggsae] 7.0E-20
Sequence
Target Sequence 
>C. ELEGANS:183970_AT
atggccgtcataaatcgtgcacttcttctcttgtgtattctgtttgctttatccgaagct
tacagtcgcatggagttggaagaccgcatgcagatgtcgcgatttcaagaaccggtaaaa
ggagccgctggccaaatgggaggtgatccgtacatccactacttatcggagtatttcgga
cgtcccatgaagcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCCGTCATAAATCGTGCACTTC 318 53 13 Antisense
TGCACTTCTTCTCTTGTGTATTCTG 507 577 30 Antisense
TGTGTATTCTGTTTGCTTTATCCGA 72 555 44 Antisense
TATCCGAAGCTTACAGTCGCATGGA 128 657 62 Antisense
GTCGCATGGAGTTGGAAGACCGCAT 394 475 77 Antisense
GAAGACCGCATGCAGATGTCGCGAT 580 339 91 Antisense
GATGTCGCGATTTCAAGAACCGGTA 410 409 105 Antisense
GAGCCGCTGGCCAAATGGGAGGTGA 12 387 134 Antisense
TGGGAGGTGATCCGTACATCCACTA 680 553 149 Antisense
CCGTACATCCACTACTTATCGGAGT 654 263 160 Antisense
GTATTTCGGACGTCCCATGAAGCGC 563 451 183 Antisense
Sequence Source Affymetrix Proprietary Database