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[183969_at]

Description M03C11.4 /REP_DB=WormBase Gene ID /WP=CE03495 /TR=Q21484 /GB=CAA88954.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 56      4grp_total > 07      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 81.3
(1)
A 		30
(-3)
A 		86.2
(1.4)
A 		106.8
(3)
A 		77
B 101.6
(2.1)
A 		21.6
(-3)
A 		97.6
(1.9)
A 		114.9
(3)
A 		93
C 65.3
(0.9)
A 		25.2
(-3)
A 		48.8
(-0.7)
A 		87.5
(3)
A 		62
avr 82.7
(1.4) 		25.6
(-3) 		77.5
(1) 		103.1
(3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 58.5
(-0.4)
A 		52.4
(-0.8)
A 		20.1
(-2.7)
A 		15.9
(-3)
A 		16.6
(-3)
A 		115.8
(3)
A 		100
B 34
(-1.6)
A 		41.1
(-0.8)
A 		22.6
(-2.7)
A 		23.9
(-2.6)
A 		19.6
(-3)
A 		79.3
(3)
A 		60
C 27
(-2.1)
A 		116.3
(3)
A 		68.7
(0.3)
A 		29.6
(-2)
A 		11.8
(-3)
A 		101.7
(2.2)
A 		105
avr 39.8
(-1.3) 		69.9
(0.9) 		37.1
(-1.5) 		23.1
(-2.5) 		16
(-3) 		98.9
(3) 		83
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 29.6
(3)
A 		6.5
(-3)
A 		22.5
(1.2)
A 		15.6
(-0.6)
A 		23
B 32.4
(3)
A 		5.3
(-3)
A 		22.6
(0.8)
A 		24.5
(1.3)
A 		27
C 21.6
(3)
A 		7.2
(-3)
A 		17
(1.1)
A 		14.7
(0.1)
A 		14
avr 27.9
(3) 		6.3
(-3) 		20.7
(1) 		18.3
(0.3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 10.8
(-1.3)
A 		18.6
(0.6)
A 		4.4
(-2.9)
A 		4
(-3)
A 		5
(-2.8)
A 		28.2
(3)
A 		24
B 11.8
(-1.4)
A 		13.7
(-1)
A 		5.5
(-3)
A 		6.3
(-2.8)
A 		7.9
(-2.4)
A 		29.6
(3)
A 		24
C 10
(-1.8)
A 		35.5
(3)
A 		17.5
(-0.4)
A 		6
(-2.6)
A 		3.8
(-3)
A 		34.1
(2.7)
A 		32
avr 10.9
(-1.7) 		22.6
(1.1) 		9.1
(-2.1) 		5.4
(-3) 		5.6
(-3) 		30.6
(3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183969_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6769
Sequence Type Exemplar sequence
Representative Public ID M03C11.4 NCBI
Target Description M03C11.4 /REP_DB=WormBase Gene ID /WP=CE03495 /TR=Q21484 /GB=CAA88954.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066895(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066895 NCBI Caenorhabditis elegans M03C11.4 (M03C11.4) mRNA, complete cds. 11/11 None
SNAP00000000517 ENSEMBL cdna:SNAP chromosome:CEL140:III:10405720:10421514:-1 11/11 None
GENEFINDER00000000555 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10405720:10407126:-1 11/11 None
M03C11.4 ENSEMBL cdna:known chromosome:CEL140:III:10405147:10407560:-1 gene:M03C11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10405715-10407556(-) 95.14 100.0
Public Domain and Genome References
Gene Title
Ensembl M03C11.4
Entrez Gene 176458 Entrez gene
SwissProt Q21484 EMBL-EBI
WormBase CE03495 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:247972_AT histone acetyltransferase family protein at
CANINE_2:CFAAFFX.19978.1.S1_AT similar to histone aminotransferase 1 (predicted) cfa
DROSOPHILA_2:1629635_AT dm
DROSGENOME1:149351_AT dm
DROSOPHILA_2:1634321_S_AT dm
CHICKEN:GGA.2476.1.S1_AT histone acetyltransferase 1 gga
HG-FOCUS:203138_AT histone acetyltransferase 1 hs
HG-U133A:203138_AT histone acetyltransferase 1 hs
HG-U133_PLUS_2:203138_AT histone acetyltransferase 1 hs
HG-U133A_2:203138_AT histone acetyltransferase 1 hs
U133_X3P:G4504340_3P_AT histone acetyltransferase 1 hs
HG-U95AV2:41855_AT histone acetyltransferase 1 hs
HG-U95D:73919_AT Histone acetyltransferase 1 hs
HU35KSUBD:RC_C21422_AT Histone acetyltransferase 1 hs
MOE430A:1428061_AT histone aminotransferase 1 mm
MOUSE430_2:1428061_AT histone aminotransferase 1 mm
MOUSE430A_2:1428061_AT histone aminotransferase 1 mm
MU11KSUBA:AA261757_AT histone aminotransferase 1 mm
MG-U74AV2:97895_F_AT histone aminotransferase 1 mm
MG-U74AV2:97896_R_AT histone aminotransferase 1 mm
MG-U74AV2:101121_AT Histone aminotransferase 1 (Hat1), mRNA mm
MOUSE430_2:1420068_AT Histone aminotransferase 1 (Hat1), mRNA mm
MOUSE430A_2:1420068_AT Histone aminotransferase 1 (Hat1), mRNA mm
MOE430A:1420068_AT Histone aminotransferase 1 (Hat1), mRNA mm
MOUSE430_2:1420236_AT Histone aminotransferase 1 (Hat1), mRNA mm
MOE430A:1420236_AT Histone aminotransferase 1 (Hat1), mRNA mm
MOUSE430A_2:1420236_AT Histone aminotransferase 1 (Hat1), mRNA mm
MOUSE430_2:1420237_AT Histone aminotransferase 1 (Hat1), mRNA mm
MOE430A:1420237_AT Histone aminotransferase 1 (Hat1), mRNA mm
MOUSE430A_2:1420237_AT Histone aminotransferase 1 (Hat1), mRNA mm
MOUSE430A_2:1449720_AT Histone aminotransferase 1 (Hat1), mRNA mm
MOE430A:1449720_AT Histone aminotransferase 1 (Hat1), mRNA mm
MOUSE430_2:1449720_AT Histone aminotransferase 1 (Hat1), mRNA mm
MG-U74AV2:94095_AT Histone aminotransferase 1 (Hat1), mRNA mm
MU11KSUBA:AA220745_AT Histone aminotransferase 1 (Hat1), mRNA mm
MU19KSUBA:TC19550_AT Histone aminotransferase 1 (Hat1), mRNA mm
MU11KSUBA:AA517747_RC_AT Histone aminotransferase 1 (Hat1), mRNA mm
RAE230B:1393647_AT histone aminotransferase 1 (predicted) rn
RAT230_2:1393647_AT histone aminotransferase 1 (predicted) rn
YEAST_2:1775160_AT Catalytic subunit of the Hat1p-Hat2p histone acetyltransferase complex that uses the cofactor acetyl coenzyme A, to acetylate free nuclear and cytoplasmic histone H4; involved in telomeric silencing and DNA double-strand break repair Sc
Protein Similarities
Method ID Description E-Value
blast CAA88954 Hypothetical protein M03C11.4 [Caenorhabditis elegans] ref|NP_499296.1| M03C11.4 [Caenorhabditis elegans] 0.0
blast CAE71475 Hypothetical protein CBG18393 [Caenorhabditis briggsae] 0.0
blast XP_785091 PREDICTED: similar to histone aminotransferase 1 (predicted) [Strongylocentrotus purpuratus] 2.0E-71
blast XP_785091 PREDICTED: similar to histone aminotransferase 1 (predicted) [Strongylocentrotus purpuratus] 3.0E-71
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499296.1 1 94-116
M03C11.4 1 94-116
Sequence
Target Sequence 
>C. ELEGANS:183969_AT
caggatccgtccacgaattgcacagatgctattgctccctcaatacagaaaatctggaat
tggagccagtttcatggaatctttcctgcgagatcttcgtgcctctccagaagttttcga
cgtaaccgtcgagtctcccggagatcagttcgtcagcctccgtgactatgtggattgtgt
caactgcatgacactgcgggaatttgcaccggagaatctcaagaggggatactcggacaa
aatgcgtcaggccgcactggaaaagctcaagatttccagacaacaagcccgtcgagtcta
tgaaattttgcgttatcgtgctacaaataagaaggataaagaagagctgaaagcgcagag
aatcgatgtgaaacgtcggttgtatgcaccaatgaagaaatcggatcaggactggaagcg
tctgaatctcgcgttgacacccgatgagcttcgacaagcggcctgtggacaaatggatga
ggaaaccaagttctcgacgctct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGGATCCGTCCACGAATTGCACAG 56 209 1059 Antisense
ATTGCACAGATGCTATTGCTCCCTC 196 7 1075 Antisense
TGGAATCTTTCCTGCGAGATCTTCG 101 547 1133 Antisense
CGTGCCTCTCCAGAAGTTTTCGACG 210 245 1156 Antisense
ACCGTCGAGTCTCCCGGAGATCAGT 343 89 1183 Antisense
GTCAGCCTCCGTGACTATGTGGATT 414 465 1210 Antisense
GACACTGCGGGAATTTGCACCGGAG 188 367 1248 Antisense
GCGTCAGGCCGCACTGGAAAAGCTC 321 289 1302 Antisense
TGGAAGCGTCTGAATCTCGCGTTGA 336 547 1471 Antisense
CTTCGACAAGCGGCCTGTGGACAAA 586 219 1507 Antisense
GAGGAAACCAAGTTCTCGACGCTCT 487 403 1537 Antisense
Sequence Source Affymetrix Proprietary Database