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[183968_at]

Description T22D2.1 /REP_DB=WormBase Gene ID /WP=CE20097 /TR=Q9N5D9 /GB=AAF39969.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 42      6grp_cgc > 54      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 3.5
(-3)
A 		5.3
(-0.8)
A 		4.6
(-1.7)
A 		8.5
(3)
A 		5
B 6.6
(-3)
A 		17.2
(0)
A 		21.4
(1.2)
A 		27.5
(3)
A 		21
C 13.5
(-2.1)
A 		41.7
(3)
A 		22.1
(-0.6)
A 		8.8
(-3)
A 		33
avr 7.9
(-3) 		21.4
(3) 		16
(0.6) 		14.9
(0.1) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 21.7
(0.8)
A 		4.2
(-3)
A 		28.7
(2.3)
A 		15
(-0.6)
A 		31.7
(3)
A 		28.7
(2.3)
A 		28
B 21.4
(0.3)
A 		34.5
(2.8)
A 		35.6
(3)
A 		22.1
(0.5)
A 		26.5
(1.3)
A 		3.8
(-3)
A 		32
C 4.8
(-2.8)
A 		53.7
(3)
A 		8.7
(-2.3)
A 		3.5
(-2.9)
A 		4.8
(-2.8)
A 		2.7
(-3)
A 		51
avr 16
(-1.6) 		30.8
(3) 		24.3
(1) 		13.5
(-2.4) 		21
(-0.1) 		11.7
(-3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1.3
(3)
A 		1.2
(-3)
A 		1.2
(-3)
A 		1.2
(-3)
A 		0
B 2.1
(-3)
A 		4.3
(0.5)
A 		5
(1.6)
A 		5.9
(3)
A 		4
C 4.5
(-1.3)
A 		12
(3)
A 		7.7
(0.5)
A 		1.5
(-3)
A 		11
avr 2.6
(-3) 		5.8
(3) 		4.6
(0.8) 		2.9
(-2.4) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 4
(-1.1)
A 		1.5
(-3)
A 		6.3
(0.6)
A 		3.8
(-1.3)
A 		9.6
(3)
A 		7
(1.1)
A 		8
B 7.4
(0.6)
A 		11.5
(3)
A 		8.6
(1.3)
A 		5.9
(-0.3)
A 		10.8
(2.6)
A 		1.4
(-3)
A 		10
C 1.8
(-2.6)
A 		16.4
(3)
A 		2.2
(-2.4)
A 		0.7
(-3)
A 		1.5
(-2.7)
A 		0.9
(-2.9)
A 		16
avr 4.4
(-1.8) 		9.8
(3) 		5.7
(-0.7) 		3.5
(-2.6) 		7.3
(0.8) 		3.1
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183968_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4831
Sequence Type Exemplar sequence
Representative Public ID T22D2.1 NCBI
Target Description T22D2.1 /REP_DB=WormBase Gene ID /WP=CE20097 /TR=Q9N5D9 /GB=AAF39969.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061875(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061875 NCBI Caenorhabditis elegans Variable ABnormal morphology family member (vab-19) (vab-19) mRNA, complete cds. 11/11 None
T22D2.1 ENSEMBL cdna:known chromosome:CEL140:II:2443293:2451142:1 gene:T22D2.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000004798 5/11 Cross Hyb Matching Probes None
GENEFINDER00000004799 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2447043-2450912(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol vab-19
Ensembl T22D2.1
Entrez Gene 173599 Entrez gene
SwissProt Q9N5D9 EMBL-EBI
WormBase CE34375 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7018 microtubule-based movement inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5874 microtubule inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF39969 Variable abnormal morphology protein 19 [Caenorhabditis elegans] ref|NP_494276.2| Variable ABnormal morphology family member (vab-19) [Caenorhabditis elegans] gb|AAQ01772.1| VAB-19 [Caenorhabditis elegans] 0.0
blast T32290 hypothetical protein F42G2.1 - Caenorhabditis elegans 0.0
blast CAE73066 Hypothetical protein CBG20436 [Caenorhabditis briggsae] 1.0E-180
Protein Domains
Database ID Description E-Value
Pfam IPR002110 EMBL-EBI Ankyrin 5.8E-6
Pfam IPR002110 EMBL-EBI Ankyrin 0.93
Pfam IPR002110 EMBL-EBI Ankyrin 3.6E-9
Pfam IPR002110 EMBL-EBI Ankyrin 9.6E-8
Sequence
Target Sequence 
>C. ELEGANS:183968_AT
ccagatcctccatatggtcgtcaatttctgcgatcaaaatggaaatactgccctacacta
tgcggtttcacacgccaattttgcagtggtttcgtcgattttggacagtggagaatgcga
tttggatgctccgaatagggcaggctacacggctgtaatgctggccgccctctcccagct
ggacgacgatatggagaaagcagtagtccaccgcctattccagatgggaaatgttaatgc
aaaagcttcccagcatgggcaaacggcacttatgttggcagtgtctcatggaaaaaagac
gacgactgagcttcttctggcgtgcggagccaacgttaacgagcaagaccaggatggctc
gacggctctgatgtgtgcggcggagcatggacataaggagcttgttaagatgcttttggc
tgaaaatcttgtgaatgcttcacttactgatgtggacaactctaccgccttatcaattgc
tt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAGATCCTCCATATGGTCGTCAAT 703 271 915 Antisense
TACACTATGCGGTTTCACACGCCAA 330 643 968 Antisense
ATTTTGCAGTGGTTTCGTCGATTTT 132 15 992 Antisense
GGATGCTCCGAATAGGGCAGGCTAC 170 513 1038 Antisense
GGCAGGCTACACGGCTGTAATGCTG 349 535 1053 Antisense
CTCTCCCAGCTGGACGACGATATGG 209 231 1084 Antisense
TCCCAGCATGGGCAAACGGCACTTA 385 595 1162 Antisense
AAAGACGACGACTGAGCTTCTTCTG 505 121 1209 Antisense
TTCTTCTGGCGTGCGGAGCCAACGT 80 689 1226 Antisense
GCAAGACCAGGATGGCTCGACGGCT 710 319 1257 Antisense
AACTCTACCGCCTTATCAATTGCTT 449 141 1372 Antisense
Sequence Source Affymetrix Proprietary Database