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[183967_at]

Description B0432.8 /REP_DB=WormBase Gene ID /WP=CE07746 /TR=P90989 /GB=AAB37894.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 0      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 8.5
(-3)
A 		40.5
(3)
A 		11.7
(-2.4)
A 		33.2
(1.6)
A 		32
B 32.2
(-0.9)
A 		11.5
(-3)
A 		60.6
(2.1)
A 		69.8
(3)
A 		58
C 59.9
(0.9)
A 		24.5
(-3)
A 		59.3
(0.8)
A 		79.6
(3)
A 		55
avr 33.5
(-1.6) 		25.5
(-3) 		43.9
(0.1) 		60.9
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 135
1 2 3 4 5 6 range
A 88.5
(-0.2)
A 		43.5
(-2.6)
A 		36.9
(-3)
A 		73.2
(-1)
A 		114.2
(1.2)
A 		146.2
(3)
P 		109
B 48.5
(-0.8)
A 		29.7
(-1.9)
A 		11.6
(-3)
A 		50
(-0.8)
A 		89.1
(1.5)
P 		114.2
(3)
P 		103
C 28.8
(-2.2)
A 		17.7
(-3)
A 		21.8
(-2.7)
A 		59.9
(-0.1)
A 		54.9
(-0.4)
A 		104.5
(3)
P 		87
avr 55.3
(-1.1) 		30.3
(-2.6) 		23.4
(-3) 		61
(-0.7) 		86.1
(0.8) 		121.6
(3) 		98
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 3.1
(-3)
A 		8.8
(3)
A 		3.1
(-3)
A 		4.9
(-1.1)
A 		6
B 10.3
(0.7)
A 		2.8
(-3)
A 		14
(2.6)
A 		14.9
(3)
A 		12
C 19.8
(2.6)
A 		7
(-3)
A 		20.7
(3)
A 		13.4
(-0.2)
A 		14
avr 11.1
(1.6) 		6.2
(-3) 		12.6
(3) 		11.1
(1.6) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 16.3
(-1.2)
A 		15.5
(-1.4)
A 		8
(-3)
A 		18.6
(-0.7)
A 		34.5
(2.8)
A 		35.6
(3)
P 		28
B 16.9
(-0.9)
A 		9.9
(-1.9)
A 		2.8
(-3)
A 		13.2
(-1.4)
A 		36.2
(2)
P 		42.6
(3)
P 		40
C 10.7
(-1.9)
A 		5.4
(-3)
A 		5.6
(-3)
A 		12
(-1.7)
A 		17.8
(-0.5)
A 		35
(3)
P 		30
avr 14.6
(-1.3) 		10.3
(-2.1) 		5.5
(-3) 		14.6
(-1.3) 		29.5
(1.5) 		37.7
(3) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183967_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5388
Sequence Type Exemplar sequence
Representative Public ID B0432.8 NCBI
Target Description B0432.8 /REP_DB=WormBase Gene ID /WP=CE07746 /TR=P90989 /GB=AAB37894.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061290(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061290 NCBI Caenorhabditis elegans B0432.8 (B0432.8) mRNA, complete cds. 11/11 None
SNAP00000033638 ENSEMBL cdna:SNAP chromosome:CEL140:II:276860:285216:-1 10/11 None
B0432.8 ENSEMBL cdna:known chromosome:CEL140:II:276860:280490:-1 gene:B0432.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000033651 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:276859-280492(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0432.8
Entrez Gene 181990 Entrez gene
SwissProt P90989 EMBL-EBI
WormBase CE34637 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.18210.1.S1_AT similar to B0432.8 cfa
CANINE_2:CFAAFFX.19171.1.S1_AT similar to B0432.8 cfa
CHICKEN:GGA.14070.1.S1_AT TatD DNase domain containing 3 gga
HG-U133_PLUS_2:235069_AT TatD DNase domain containing 3 hs
HG-U133B:235069_AT TatD DNase domain containing 3 hs
U133_X3P:HS.130161.0.A1_3P_AT TatD DNase domain containing 3 hs
U133_X3P:HS.123386.0.S1_3P_AT TatD DNase domain containing 3 hs
HG-U133_PLUS_2:228867_AT TatD DNase domain containing 3 hs
HG-U133B:228867_AT TatD DNase domain containing 3 hs
HG-U95C:66894_AT TatD DNase domain containing 3 hs
HG-U95C:66895_S_AT TatD DNase domain containing 3 hs
HG-U95E:90893_AT TatD DNase domain containing 3 hs
MOUSE430_2:1428769_AT TatD DNase domain containing 3 mm
MOE430B:1428769_AT TatD DNase domain containing 3 mm
MG-U74BV2:115483_AT TatD DNase domain containing 3 mm
MG-U74CV2:134760_AT TatD DNase domain containing 3 mm
MU19KSUBC:TC36100_AT TatD DNase domain containing 3, mRNA (cDNA clone IMAGE:30247619) mm
RG-U34C:RC_AI136830_AT similar to membrane targeting translocation system protein like (2A562) rn
RAE230A:1388578_AT similar to membrane targeting translocation system protein like (2A562) rn
RAT230_2:1388578_AT similar to membrane targeting translocation system protein like (2A562) rn
Protein Similarities
Method ID Description E-Value
blast AAB37894 Hypothetical protein B0432.8 [Caenorhabditis elegans] ref|NP_493691.2| B0432.8 [Caenorhabditis elegans] 1.0E-148
blast AAB37894 Hypothetical protein B0432.8 [Caenorhabditis elegans] ref|NP_493691.2| B0432.8 [Caenorhabditis elegans] 1.0E-141
blast AAB37893 Hypothetical protein B0432.13 [Caenorhabditis elegans] ref|NP_740965.1| B0432.13 [Caenorhabditis elegans] 1.0E-110
blast AAB37895 Hypothetical protein B0432.10 [Caenorhabditis elegans] ref|NP_493693.1| B0432.10 [Caenorhabditis elegans] 1.0E-105
blast CAE62843 Hypothetical protein CBG07022 [Caenorhabditis briggsae] 2.0E-79
blast BAE33572.1 unnamed protein product [Mus musculus] 3.0E-49
Protein Domains
Database ID Description E-Value
Pfam IPR001130 EMBL-EBI TatD-related deoxyribonuclease 4.9E-73
Pfam IPR001130 EMBL-EBI TatD-related deoxyribonuclease 3.2E-62
Pfam IPR001841 EMBL-EBI Zn-finger, RING 3.7E-12
Pfam IPR001279 EMBL-EBI Beta-lactamase-like 1.9E-13
Sequence
Target Sequence 
>C. ELEGANS:183967_AT
atggagcaatttttcgtcgagcacgagcgtgatatcatttgtgttggagaatgtggcttg
gatcatacaatttctcagtttaagctcaccacggaggattttgaggagcaggagacggtt
ttcaagtggcaaattgatttggcaaagcatttcgagaaaccgttaattcttgaaattcca
gatatttccagaaatgttcattcccgaagtgcagcccgccgtacaattgagatccttctg
gaatgccacgtggcacccgatcaagtagtccttcatgcgtttgatggaaccccaggagac
ctgaaattgggactagaagccggttatttgttcagtatacctccgtcttttgggaaaagt
gaagagacaacgcaactcatcgaatccataccactttctcaacttctactagaaaccgat
tctccagcattgggaccggaaaaaggctgcaaaaatgtgccggccaatttgagaatctcc
gcggaaattgtggcgaaaatcaagaaattggaaattgatgacatcatcagtgccacgtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGAGCAATTTTTCGTCGAGCACG 171 53 538 Antisense
TTTCTCAGTTTAAGCTCACCACGGA 46 673 608 Antisense
AAATGTTCATTCCCGAAGTGCAGCC 660 119 729 Antisense
CCGCCGTACAATTGAGATCCTTCTG 425 261 753 Antisense
CACCCGATCAAGTAGTCCTTCATGC 640 199 791 Antisense
TCATGCGTTTGATGGAACCCCAGGA 146 619 810 Antisense
TCAGTATACCTCCGTCTTTTGGGAA 472 623 869 Antisense
CAACTCATCGAATCCATACCACTTT 332 187 910 Antisense
ACCGATTCTCCAGCATTGGGACCGG 2 87 952 Antisense
TGTGCCGGCCAATTTGAGAATCTCC 333 557 993 Antisense
TGATGACATCATCAGTGCCACGTCA 157 567 1053 Antisense
Sequence Source Affymetrix Proprietary Database