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[183965_at]

Description F46B3.16 /REP_DB=WormBase Gene ID /WP=CE20809 /TR=Q9XTI2 /GB=CAA16376.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 28      4grp_total > 24      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 20.7
(-1.7)
A 		14.3
(-3)
A 		36.7
(1.5)
A 		43.9
(3)
A 		30
B 15.5
(-3)
A 		47
(1.5)
A 		57.1
(3)
A 		30.4
(-0.9)
A 		42
C 35.8
(-2.2)
A 		39.4
(-1.8)
A 		29
(-3)
A 		80.8
(3)
A 		52
avr 24
(-3) 		33.6
(-0.9) 		40.9
(0.7) 		51.7
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 66
(3)
A 		24.1
(-1.2)
A 		17.5
(-1.8)
A 		5.9
(-3)
A 		5.6
(-3)
A 		7.8
(-2.8)
A 		60
B 46.4
(3)
A 		6.2
(-3)
A 		13.8
(-1.9)
A 		18.2
(-1.2)
A 		30.3
(0.6)
A 		26.9
(0.1)
A 		40
C 16.1
(-1.2)
A 		38.7
(3)
A 		22.9
(0.1)
A 		6.4
(-3)
A 		22.1
(-0.1)
A 		24.6
(0.4)
A 		32
avr 42.8
(3) 		23
(-0.6) 		18.1
(-1.5) 		10.2
(-3) 		19.3
(-1.3) 		19.8
(-1.2) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 7.5
(1.1)
A 		3.1
(-3)
A 		9.6
(3)
A 		6.4
(0)
A 		7
B 4.9
(-3)
A 		11.6
(1.8)
A 		13.2
(3)
A 		6.5
(-1.8)
A 		8
C 11.8
(-0.1)
A 		11.3
(-0.9)
A 		10.1
(-3)
A 		13.6
(3)
A 		4
avr 8.1
(-3) 		8.7
(-1.8) 		11
(3) 		8.8
(-1.6) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 12.2
(3)
A 		8.6
(1)
A 		3.8
(-1.7)
A 		1.5
(-3)
A 		1.7
(-2.9)
A 		1.9
(-2.8)
A 		11
B 16.2
(3)
A 		2.1
(-3)
A 		3.4
(-2.4)
A 		4.8
(-1.9)
A 		12.3
(1.3)
A 		10
(0.4)
A 		14
C 6
(-0.3)
A 		11.8
(3)
A 		5.8
(-0.4)
A 		1.3
(-3)
A 		7.1
(0.3)
A 		8.2
(0.9)
A 		11
avr 11.5
(3) 		7.5
(0.3) 		4.3
(-1.8) 		2.5
(-3) 		7
(0) 		6.7
(-0.2) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183965_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12970
Sequence Type Exemplar sequence
Representative Public ID F46B3.16 NCBI
Target Description F46B3.16 /REP_DB=WormBase Gene ID /WP=CE20809 /TR=Q9XTI2 /GB=CAA16376.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075584(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075584 NCBI Caenorhabditis elegans F46B3.16 (F46B3.16) mRNA, complete cds. 11/11 None
F46B3.16 ENSEMBL cdna:known chromosome:CEL140:V:20632513:20633364:1 gene:F46B3.16 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000021700 2/11 Cross Hyb Matching Probes None
SNAP00000039768 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20632556-20633364(+) 99.68 99.68
Public Domain and Genome References
Gene Title
Ensembl F46B3.16
Entrez Gene 185838 Entrez gene
SwissProt Q9XTI2 EMBL-EBI
WormBase CE20809 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04409 Hypothetical protein F46B3.16 [Caenorhabditis elegans] emb|CAA16376.1| Hypothetical protein F46B3.16 [Caenorhabditis elegans] ref|NP_507985.1| F46B3.16 [Caenorhabditis elegans] 1.0E-122
blast AAG24076 Hypothetical protein F25E5.5 [Caenorhabditis elegans] ref|NP_504913.1| F25E5.5 [Caenorhabditis elegans] 3.0E-24
blast NP_504159 Y45G5AM.3 [Caenorhabditis elegans] gb|AAG23365.1| Hypothetical protein Y45G5AM.3 [Caenorhabditis elegans] 4.0E-23
Sequence
Target Sequence 
>C. ELEGANS:183965_AT
gacactagcggcatcttgagtcatccaagctgtgaagaaatccaccttaatgtggcaaat
tttgagactgtcgattggtggcttcaaagatgtccggcacaaattgaaatgcttgttatt
gatgatagctggcaaggtcaaggacctgttttgtacccgttggatttcatggacagacca
caggtagtgaatgctggctgcctgttcctgagtcgggccatacctgtgacagatgaacaa
ttcatgaacctgaaagctggatcagtgagcattaatagcaaaagtattaccgatagatgc
ataaatcagttcatcaagaactgggttaatgggaaatgcgtcgaaagtttcacccaatac
actttcaaatcacaagcgatggaacgagtgaccgcggttatcctgcaaggagttcagcaa
agcattgcactttctggcccggatcaatttttttgttgctcctgtgaaaaaccatgtggt
cgtggtgattattatgtgattccgagccttgtcgatcccaacgactacatcagcgtgttc
ttctgtgcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACACTAGCGGCATCTTGAGTCATC 442 367 31 Antisense
GAGACTGTCGATTGGTGGCTTCAAA 433 393 94 Antisense
TCAAGGACCTGTTTTGTACCCGTTG 21 633 168 Antisense
GTACCCGTTGGATTTCATGGACAGA 10 459 183 Antisense
TAGTGAATGCTGGCTGCCTGTTCCT 410 653 215 Antisense
GTCGGGCCATACCTGTGACAGATGA 367 473 242 Antisense
GTTTCACCCAATACACTTTCAAATC 587 449 377 Antisense
TGACCGCGGTTATCCTGCAAGGAGT 297 569 419 Antisense
CACTTTCTGGCCCGGATCAATTTTT 174 197 458 Antisense
TATGTGATTCCGAGCCTTGTCGATC 638 655 523 Antisense
TACATCAGCGTGTTCTTCTGTGCGC 310 645 556 Antisense
Sequence Source Affymetrix Proprietary Database