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[183964_at]

Description T24A6.7 /REP_DB=WormBase Gene ID /WP=CE14136 /TR=O61936 /GB=AAC17794.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 24      4grp_total > 31      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 92.4
(3)
P 		42.2
(-2.5)
A 		37.9
(-3)
A 		79.6
(1.6)
A 		55
B 84.8
(3)
A 		7.4
(-3)
A 		14.2
(-2.5)
A 		43.5
(-0.2)
A 		77
C 113.2
(3)
P 		42
(-1)
A 		5.8
(-3)
A 		76.1
(0.9)
A 		107
avr 96.8
(3) 		30.5
(-2.1) 		19.3
(-3) 		66.4
(0.6) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 101.9
(1.4)
P 		129
(3)
A 		118
(2.4)
A 		55.2
(-1.3)
A 		47.7
(-1.8)
A 		26.5
(-3)
A 		103
B 155.1
(3)
P 		132
(1.8)
P 		85.1
(-0.6)
A 		77.1
(-1)
A 		61.3
(-1.8)
A 		38.9
(-3)
A 		116
C 169.9
(3)
P 		154.7
(2.3)
M 		93.9
(-0.4)
P 		68.8
(-1.6)
A 		37.7
(-3)
A 		38.2
(-3)
A 		132
avr 142.3
(3) 		138.6
(2.8) 		99
(0.6) 		67
(-1.2) 		48.9
(-2.2) 		34.5
(-3) 		108
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 33.6
(3)
P 		9.2
(-3)
A 		9.9
(-2.8)
A 		11.7
(-2.4)
A 		24
B 27
(3)
A 		1.8
(-3)
A 		3.3
(-2.6)
A 		9.3
(-1.2)
A 		25
C 37.5
(3)
P 		12.1
(-1.3)
A 		2
(-3)
A 		12.8
(-1.2)
A 		36
avr 32.7
(3) 		7.7
(-2.4) 		5.1
(-3) 		11.3
(-1.7) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 18.8
(-1.1)
P 		45.9
(3)
A 		25.7
(-0.1)
A 		14
(-1.8)
A 		14.4
(-1.8)
A 		6.4
(-3)
A 		40
B 54
(3)
P 		43.9
(1.5)
P 		20.7
(-2.1)
A 		20.4
(-2.1)
A 		24.9
(-1.4)
A 		14.5
(-3)
A 		40
C 63
(3)
P 		47.2
(1.1)
M 		23.9
(-1.6)
P 		13.8
(-2.8)
A 		12.2
(-3)
A 		12.8
(-2.9)
A 		51
avr 45.3
(2.9) 		45.7
(3) 		23.4
(-0.9) 		16.1
(-2.1) 		17.2
(-2) 		11.2
(-3) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183964_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15598
Sequence Type Exemplar sequence
Representative Public ID T24A6.7 NCBI
Target Description T24A6.7 /REP_DB=WormBase Gene ID /WP=CE14136 /TR=O61936 /GB=AAC17794.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071583(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071583 NCBI Caenorhabditis elegans T24A6.7 (T24A6.7) mRNA, complete cds. 11/11 None
GENEFINDER00000027444 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3525120:3532599:1 11/11 None
T24A6.7 ENSEMBL cdna:known chromosome:CEL140:V:3525120:3526004:1 gene:T24A6.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027420 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3525119-3526004(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T24A6.7
Entrez Gene 188825 Entrez gene
SwissProt O61936 EMBL-EBI
WormBase CE14136 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17805 Seven tm receptor protein 260 [Caenorhabditis elegans] ref|NP_503985.1| Seven TM Receptor family member (str-260) [Caenorhabditis elegans] 1.0E-146
blast AAC17794 Hypothetical protein T24A6.7 [Caenorhabditis elegans] ref|NP_503984.1| T24A6.7 [Caenorhabditis elegans] 1.0E-120
blast AAC17794 Hypothetical protein T24A6.7 [Caenorhabditis elegans] ref|NP_503984.1| T24A6.7 [Caenorhabditis elegans] 1.0E-114
blast AAC17793 Serpentine receptor, class bc (class b-like) protein 66 [Caenorhabditis elegans] ref|NP_503986.1| Serpentine Receptor, class BC (class B-like) family member (srbc-66) [Caenorhabditis elegans] 1.0E-112
blast AAB65376 Hypothetical protein C07G3.2 [Caenorhabditis elegans] ref|NP_503983.1| C07G3.2 [Caenorhabditis elegans] 7.0E-73
blast CAE62231 Hypothetical protein CBG06284 [Caenorhabditis briggsae] 6.0E-72
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.3E-4
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 3.1E-104
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000027444 9 261-280,300-322,374-396,422-444,512-534,555-574,610-632,645-667,677-699
Sequence
Target Sequence 
>C. ELEGANS:183964_AT
tcaaaacttacatttctccggaccaaaccaaacaatttgtatttttttacaaatttgact
gtgtattttccaacttttatccatgcgaattttctgctcaagaattcgagaacgatgtag
aaaaaaatgtcaatttcaattgcagtgagcagtattttatgtaccataaagctttgttgg
ttggggactctgaaatcgctgggaaaattctgaaggagactgatcctagaaaaatgaaaa
ggctaggaaggcaattgagtatgagcaagaagcaattggaagaatggtctcaaaattcta
aagaagttatgtataacgggtgtcttgaaaagttttcccaaaataatgtttgccgtgaaa
atctgttcagaactcatggtatgagacttgtagaagcatcgccaatggatagaatatggg
gaattggactgagccaccacgacaaacgatgtgaaaatgagcaaacttggagaggaacta
attggatgggttccgttttggataaagttcgagaggaattatggacaaagtcagagtacc
agcagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAAACTTACATTTCTCCGGACCA 511 629 20 Antisense
GACTGTGTATTTTCCAACTTTTATC 98 377 76 Antisense
TATCCATGCGAATTTTCTGCTCAAG 686 657 97 Antisense
AAAGCTTTGTTGGTTGGGGACTCTG 153 121 187 Antisense
TGGGGACTCTGAAATCGCTGGGAAA 1 553 201 Antisense
GTTTGCCGTGAAAATCTGTTCAGAA 686 449 367 Antisense
GAGACTTGTAGAAGCATCGCCAATG 493 391 402 Antisense
TGGGGAATTGGACTGAGCCACCACG 674 553 436 Antisense
ACTGAGCCACCACGACAAACGATGT 551 97 447 Antisense
TAATTGGATGGGTTCCGTTTTGGAT 539 623 498 Antisense
GGACAAAGTCAGAGTACCAGCAGTT 149 527 542 Antisense
Sequence Source Affymetrix Proprietary Database