[Home] | [Total List]

[183963_at]

Description C29F9.2 /REP_DB=WormBase Gene ID /WP=CE08450 /TR=Q9TZB3 /GB=AAC68745.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 49      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 178
1 2 3 4 range
A 28.3
(-2.7)
A 		197
(3)
P 		155.4
(1.6)
P 		18.8
(-3)
A 		178
B 46.6
(-1.8)
A 		154.7
(2.8)
M 		159.6
(3)
A 		18.6
(-3)
A 		141
C 51.9
(-3)
A 		189.2
(2.9)
P 		190.6
(3)
P 		73.7
(-2.1)
A 		139
avr 42.3
(-2.8) 		180.3
(3) 		168.5
(2.5) 		37
(-3) 		143

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 621
1 2 3 4 5 6 range
A 57.2
(-3)
A 		114.8
(-2.3)
A 		261.5
(-0.5)
P 		541.4
(3)
P 		481.3
(2.3)
P 		68
(-2.9)
A 		484
B 78.4
(-3)
A 		131.3
(-2.5)
P 		188.4
(-1.9)
P 		668.6
(3)
P 		639.9
(2.7)
P 		94.2
(-2.8)
P 		590
C 48.1
(-3)
A 		130.4
(-2)
A 		150.8
(-1.8)
P 		556.6
(3)
P 		460.6
(1.9)
P 		78.6
(-2.6)
M 		509
avr 61.2
(-3) 		125.5
(-2.3) 		200.2
(-1.4) 		588.9
(3) 		527.3
(2.3) 		80.3
(-2.8) 		528
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 10.3
(-1.9)
A 		42.8
(3)
P 		40.6
(2.7)
P 		2.8
(-3)
A 		40
B 14.9
(-1.1)
A 		38.2
(3)
M 		37
(2.8)
A 		4
(-3)
A 		34
C 17.2
(-2.5)
A 		54.4
(1.7)
P 		66.4
(3)
P 		12.4
(-3)
A 		54
avr 14.1
(-1.9) 		45.1
(2.6) 		48
(3) 		6.4
(-3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 250
1 2 3 4 5 6 range
A 10.5
(-3)
A 		40.8
(-1.7)
A 		57
(-0.9)
P 		137.3
(2.6)
P 		145.2
(3)
P 		16.6
(-2.7)
A 		135
B 27.3
(-3)
A 		43.7
(-2.6)
P 		45.8
(-2.5)
P 		177.1
(0.9)
P 		260
(3)
P 		35.1
(-2.8)
P 		233
C 17.8
(-3)
A 		39.8
(-2)
A 		38.4
(-2.1)
P 		111.9
(1.3)
P 		149
(3)
P 		26.3
(-2.6)
M 		131
avr 18.5
(-3) 		41.4
(-2.2) 		47.1
(-2) 		142.1
(1.5) 		184.7
(3) 		26
(-2.7) 		166
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183963_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8308
Sequence Type Exemplar sequence
Representative Public ID C29F9.2 NCBI
Target Description C29F9.2 /REP_DB=WormBase Gene ID /WP=CE08450 /TR=Q9TZB3 /GB=AAC68745.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064750(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064750 NCBI Caenorhabditis elegans C29F9.2 (C29F9.2) mRNA, complete cds. 11/11 None
SNAP00000042032 ENSEMBL cdna:SNAP chromosome:CEL140:III:130957:131643:1 11/11 None
GENEFINDER00000042037 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:130957:131643:1 11/11 None
C29F9.2 ENSEMBL cdna:known chromosome:CEL140:III:130946:131753:1 gene:C29F9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:130956-131643(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C29F9.2
Entrez Gene 175179 Entrez gene
SwissProt Q9TZB3 EMBL-EBI
WormBase CE08450 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68745 Hypothetical protein C29F9.2 [Caenorhabditis elegans] ref|NP_497151.1| C29F9.2 [Caenorhabditis elegans] gb|AAG41144.1| 3A339 [Caenorhabditis elegans] 4.0E-69
Sequence
Target Sequence 
>C. ELEGANS:183963_AT
gagtgcttctgaaactaggagcaaggttttgacagatgaatctactggaagtacagcaat
tgaagaaagccccagaaaccggcaaaatgaagaaccagagcaaacttcccaaaccgagaa
tttgcaaactgacccattcaatgctagaatttctgaaattttcgagaaacaaactgtcgc
ttttgaaagacaaatgatgatcaaagaagaagaattcatgagtcaaatgaaggaaaggga
ggaagttaagctcaaagatctggagacaaagctagaaaatttcgagaaatggcgcaaaga
aattcgactggaaggggctaaggaattgaacataaagcttcacagtgagccagaggtctc
cgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTGCTTCTGAAACTAGGAGCAAG 452 401 15 Antisense
GCAAGGTTTTGACAGATGAATCTAC 202 321 35 Antisense
TGAAGAAAGCCCCAGAAACCGGCAA 655 569 75 Antisense
ATGAAGAACCAGAGCAAACTTCCCA 235 43 101 Antisense
AACCGAGAATTTGCAAACTGACCCA 571 139 126 Antisense
GCAAACTGACCCATTCAATGCTAGA 43 319 138 Antisense
TCGAGAAACAAACTGTCGCTTTTGA 652 601 176 Antisense
AGGAAGTTAAGCTCAAAGATCTGGA 631 49 254 Antisense
GAAATTCGACTGGAAGGGGCTAAGG 336 339 313 Antisense
GAACATAAAGCTTCACAGTGAGCCA 264 351 342 Antisense
TCACAGTGAGCCAGAGGTCTCCGCA 579 621 354 Antisense
Sequence Source Affymetrix Proprietary Database