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[183962_at]

Description R07C3.2 /REP_DB=WormBase Gene ID /WP=CE12524 /TR=O16777 /GB=AAB66232.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 47      4grp_total > 23      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 149.3
(3)
P 		86.1
(-0.3)
A 		35.2
(-3)
A 		111.8
(1)
A 		114
B 138.6
(3)
P 		27.6
(-3)
A 		41.6
(-2.2)
A 		131.9
(2.6)
P 		111
C 136.3
(3)
P 		32.8
(-2.6)
A 		25.4
(-3)
A 		111.5
(1.7)
P 		111
avr 141.4
(3) 		48.8
(-2.2) 		34.1
(-3) 		118.4
(1.7) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 121
1 2 3 4 5 6 range
A 147.5
(3)
P 		59.8
(-2.6)
M 		53
(-3)
A 		80
(-1.3)
A 		57.5
(-2.7)
P 		123.1
(1.5)
P 		95
B 131.3
(1.6)
P 		85.3
(-0.8)
P 		71.4
(-1.6)
A 		45.2
(-3)
A 		74.5
(-1.4)
P 		157.1
(3)
P 		112
C 97.6
(1.1)
P 		91
(0.7)
P 		84
(0.2)
P 		56.3
(-1.6)
A 		35.9
(-3)
A 		126.2
(3)
P 		90
avr 125.5
(2.2) 		78.7
(-1.3) 		69.5
(-2) 		60.5
(-2.7) 		56
(-3) 		135.5
(3) 		80
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 54.3
(3)
P 		18.7
(-1.7)
A 		9.2
(-3)
A 		16.4
(-2)
A 		45
B 44.2
(3)
P 		6.8
(-3)
A 		9.6
(-2.6)
A 		28.1
(0.4)
P 		37
C 45.1
(3)
P 		9.4
(-2.9)
A 		8.8
(-3)
A 		18.8
(-1.3)
P 		36
avr 47.9
(3) 		11.6
(-2.6) 		9.2
(-3) 		21.1
(-1.2) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 27.2
(2.1)
P 		21.3
(0.2)
M 		11.5
(-3)
A 		20.3
(-0.1)
A 		17.3
(-1.1)
P 		30
(3)
P 		19
B 45.7
(1.3)
P 		28.4
(-0.9)
P 		17.3
(-2.3)
A 		12
(-3)
A 		30.3
(-0.6)
P 		58.6
(3)
P 		47
C 36.2
(1.8)
P 		27.8
(0.2)
P 		21.4
(-1)
P 		11.3
(-3)
A 		11.6
(-2.9)
A 		42.3
(3)
P 		31
avr 36.4
(1.5) 		25.8
(-0.7) 		16.7
(-2.5) 		14.5
(-3) 		19.7
(-1.9) 		43.6
(3) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183962_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5384
Sequence Type Exemplar sequence
Representative Public ID R07C3.2 NCBI
Target Description R07C3.2 /REP_DB=WormBase Gene ID /WP=CE12524 /TR=O16777 /GB=AAB66232.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061457(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061457 NCBI Caenorhabditis elegans R07C3.2 (R07C3.2) mRNA, complete cds. 11/11 None
SNAP00000022244 ENSEMBL cdna:SNAP chromosome:CEL140:II:938972:943114:1 11/11 None
GENEFINDER00000022246 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:941123:943114:1 11/11 None
R07C3.2 ENSEMBL cdna:known chromosome:CEL140:II:941020:943114:1 gene:R07C3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:941172-943113(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R07C3.2
Entrez Gene 173475 Entrez gene
SwissProt O16777 EMBL-EBI
WormBase CE12524 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66233 Hypothetical protein R07C3.3 [Caenorhabditis elegans] ref|NP_493857.1| R07C3.3 [Caenorhabditis elegans] 0.0
blast CAB04185 Hypothetical protein F26D2.3a [Caenorhabditis elegans] ref|NP_001023854.1| F26D2.3a [Caenorhabditis elegans] 0.0
blast AAB66232 Hypothetical protein R07C3.2 [Caenorhabditis elegans] ref|NP_493858.1| R07C3.2 [Caenorhabditis elegans] 1.0E-166
blast CAE73813 Hypothetical protein CBG21363 [Caenorhabditis briggsae] 1.0E-142
blast AAB66235 Hypothetical protein R07C3.5 [Caenorhabditis elegans] ref|NP_493855.1| R07C3.5 [Caenorhabditis elegans] 3.0E-24
blast AAC67488 Hypothetical protein F58E1.11 [Caenorhabditis elegans] ref|NP_494044.2| F58E1.11 [Caenorhabditis elegans] 2.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR003406 EMBL-EBI Glycosyl transferase, family 14 3.9E-103
Sequence
Target Sequence 
>C. ELEGANS:183962_AT
gcttctgggagatcggtgtgttccgattacagtggagacccttcaaatttcagttgacag
agttcactacatcttttcgaagaacctcaacatgatctgcaagaatctagacgtttccat
catcgaaaccggcgtcaccctggatacaattctacatacctcaagttaccccctaaaatc
tctaagtctttccaatacttgggcttttgcccacccgattatccttaccgccgaacttct
gatcgttccaactagtgatcacttccaccgtatcacaaacgcccgagttcatgcgatttc
cctttctggggattttaagctgttcatttatgaatggctggagaatggaagggaaattgg
gacggagttcacgatcggaggattccgtggaagagattatgctaagaaaatggtctgtga
tattaaagaagagttcgatgaaagattccaggtggttcggagatctcacttcccattgag
cattgcgatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTTCTGGGAGATCGGTGTGTTCCG 613 303 297 Antisense
AGTGGAGACCCTTCAAATTTCAGTT 255 57 327 Antisense
GACAGAGTTCACTACATCTTTTCGA 411 369 352 Antisense
GAATCTAGACGTTTCCATCATCGAA 262 327 399 Antisense
CAATTCTACATACCTCAAGTTACCC 392 179 443 Antisense
GCCGAACTTCTGATCGTTCCAACTA 361 285 526 Antisense
AACTAGTGATCACTTCCACCGTATC 66 139 546 Antisense
AAACGCCCGAGTTCATGCGATTTCC 608 125 573 Antisense
TGGGACGGAGTTCACGATCGGAGGA 515 553 654 Antisense
CAGGTGGTTCGGAGATCTCACTTCC 244 209 745 Antisense
TCACTTCCCATTGAGCATTGCGATC 429 627 762 Antisense
Sequence Source Affymetrix Proprietary Database