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[183961_at]

Description K05F1.5 /REP_DB=WormBase Gene ID /WP=CE02809 /TR=Q21241 /GB=AAA68720.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 28      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 39.7
(-0.9)
A 		50.5
(0.7)
A 		25
(-3)
A 		66.8
(3)
A 		42
B 60.4
(1.3)
A 		72.4
(3)
M 		30.9
(-3)
A 		56.8
(0.7)
A 		42
C 79.4
(1.3)
P 		89.8
(3)
A 		53.7
(-3)
A 		87.4
(2.6)
P 		36
avr 59.8
(1.1) 		70.9
(3) 		36.5
(-3) 		70.3
(2.9) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 82.2
(2.4)
M 		65.2
(-0.2)
P 		79.6
(2)
P 		64.8
(-0.3)
A 		85.8
(3)
P 		47.5
(-3)
A 		38
B 60.3
(-2)
A 		86.7
(2)
P 		93.6
(3)
A 		73
(-0.1)
M 		76.3
(0.4)
M 		53.3
(-3)
A 		40
C 65.6
(-1.5)
M 		120.7
(3)
P 		55.6
(-2.3)
A 		47.6
(-3)
A 		59.7
(-2)
M 		56.7
(-2.3)
A 		73
avr 69.4
(-0.4) 		90.9
(3) 		76.3
(0.7) 		61.8
(-1.5) 		73.9
(0.3) 		52.5
(-3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 14.4
(3)
A 		11
(0.4)
A 		6.5
(-3)
A 		9.8
(-0.5)
A 		8
B 19.3
(3)
A 		17.9
(2.3)
M 		7.2
(-3)
A 		12.1
(-0.6)
A 		12
C 26.3
(3)
P 		25.8
(2.7)
A 		18.7
(-0.9)
A 		14.7
(-3)
P 		12
avr 20
(3) 		18.2
(1.8) 		10.8
(-3) 		12.2
(-2.1) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 15.2
(-1.5)
M 		23.2
(1.9)
P 		17.3
(-0.6)
P 		16.4
(-1)
A 		25.9
(3)
P 		11.6
(-3)
A 		14
B 21
(-2.1)
A 		28.8
(1.9)
P 		22.7
(-1.3)
A 		19.3
(-3)
M 		31
(3)
M 		19.9
(-2.7)
A 		12
C 24.3
(0.2)
M 		36.8
(3)
P 		14.1
(-2)
A 		9.6
(-3)
A 		19.3
(-0.9)
M 		19
(-0.9)
A 		27
avr 20.2
(-0.9) 		29.6
(3) 		18
(-1.8) 		15.1
(-3) 		25.4
(1.3) 		16.8
(-2.3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183961_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4814
Sequence Type Exemplar sequence
Representative Public ID K05F1.5 NCBI
Target Description K05F1.5 /REP_DB=WormBase Gene ID /WP=CE02809 /TR=Q21241 /GB=AAA68720.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062740(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062740 NCBI Caenorhabditis elegans K05F1.5 (K05F1.5) mRNA, complete cds. 11/11 A 
K05F1.5 ENSEMBL cdna:known chromosome:CEL140:II:5789137:5794357:1 gene:K05F1.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000031241 6/11 Cross Hyb Matching Probes None
GENEFINDER00000031251 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5789133-5791420(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K05F1.5
Entrez Gene 173978 Entrez gene
SwissProt Q21241 EMBL-EBI
WormBase CE28587 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68720 Hypothetical protein K05F1.5 [Caenorhabditis elegans] ref|NP_495141.1| K05F1.5 [Caenorhabditis elegans] 0.0
blast CAE59189 Hypothetical protein CBG02500 [Caenorhabditis briggsae] 0.0
blast T16567 hypothetical protein K05F1.4 - Caenorhabditis elegans 1.0E-150
Protein Domains
Database ID Description E-Value
Pfam IPR008663 EMBL-EBI Leukocyte cell-derived chemotaxin 2 7.8E-120
Sequence
Target Sequence 
>C. ELEGANS:183961_AT
tggaatagctcatctacactgcggacacaaacggtgtaactttgcatcaaatgatgctct
tttgatatcaaatcatctttccgtgttccatttaaaaaactctgaaattcctgacgaccg
aatattctatcatatcgacgtctcatgtggatctgacaggtgtcagtttaaccgaaacag
ttctcattggcactgtgccaaatgtcaaacgggatttgaaattgttggtctccattgttg
tccaatcacttcccttcccaaacggcttgattcctgttctcgtccgttctgcaagctcaa
aaagaaagcacactttcattgcaaaatttgtgatcaggtagtttggaatacaaatcaaat
gcatctgagaaccttgcattttctaatacttattgggatattcataggaggtcagacatt
gggatgtatgaaaaaagtttgtggaaacaatgcaaaaaacgattttcgtcgctgcccgga
cactgatggatcctgcggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAATAGCTCATCTACACTGCGGA 691 545 66 Antisense
TATCAAATCATCTTTCCGTGTTCCA 126 661 131 Antisense
AAACTCTGAAATTCCTGACGACCGA 377 125 162 Antisense
ATATTCTATCATATCGACGTCTCAT 483 19 187 Antisense
GACGTCTCATGTGGATCTGACAGGT 418 377 202 Antisense
AACCGAAACAGTTCTCATTGGCACT 399 147 235 Antisense
GGCACTGTGCCAAATGTCAAACGGG 662 535 254 Antisense
GTTGGTCTCCATTGTTGTCCAATCA 520 435 289 Antisense
CAAACGGCTTGATTCCTGTTCTCGT 499 191 324 Antisense
CTCGTCCGTTCTGCAAGCTCAAAAA 196 233 344 Antisense
CCCGGACACTGATGGATCCTGCGGT 186 261 540 Antisense
Sequence Source Affymetrix Proprietary Database