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[183960_at]

Description F59A1.13 /REP_DB=WormBase Gene ID /WP=CE19907 /TR=Q9XUV7 /GB=CAB04538.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 10      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 7.5
(-1.2)
A 		5.2
(-2.4)
A 		4.1
(-3)
A 		15.5
(3)
A 		11
B 4.9
(-1.2)
A 		4.1
(-2.5)
A 		3.8
(-3)
A 		7.5
(3)
A 		4
C 4.4
(-2.9)
A 		8.3
(-2.3)
A 		3.3
(-3)
A 		47.6
(3)
A 		44
avr 5.6
(-2.4) 		5.9
(-2.3) 		3.7
(-3) 		23.5
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 9.5
(3)
A 		3.6
(-2.5)
A 		3.1
(-3)
A 		8.9
(2.4)
A 		6.4
(0.1)
A 		5.3
(-0.9)
A 		6
B 4.8
(1.2)
A 		5.3
(3)
A 		5
(1.9)
A 		4.2
(-0.9)
A 		4.5
(0.2)
A 		3.6
(-3)
A 		2
C 3.2
(-2.8)
A 		3.1
(-3)
A 		4.1
(-1.5)
A 		7
(3)
A 		6.2
(1.8)
A 		6.5
(2.2)
A 		4
avr 5.8
(1) 		4
(-3) 		4.1
(-2.8) 		6.7
(3) 		5.7
(0.8) 		5.1
(-0.6) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 2.7
(3)
A 		1.1
(-3)
A 		1.1
(-3)
A 		2.3
(1.5)
A 		2
B 1.6
(3)
A 		1
(-2.1)
A 		0.9
(-3)
A 		1.6
(3)
A 		1
C 1.4
(-2.8)
A 		2.4
(-1.9)
A 		1.2
(-3)
A 		8
(3)
A 		7
avr 1.9
(-1.3) 		1.5
(-2.2) 		1.1
(-3) 		4
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 1.8
(1.1)
A 		1.3
(-0.8)
A 		0.7
(-3)
A 		2.3
(3)
A 		1.9
(1.5)
A 		1.3
(-0.8)
A 		2
B 1.7
(2.1)
A 		1.8
(3)
A 		1.2
(-2.1)
A 		1.1
(-3)
A 		1.8
(3)
A 		1.4
(-0.4)
A 		1
C 1.2
(-2)
A 		1
(-3)
A 		1
(-3)
A 		1.4
(-1)
A 		2
(2)
A 		2.2
(3)
A 		1
avr 1.6
(1) 		1.4
(-0.3) 		1
(-3) 		1.6
(1) 		1.9
(3) 		1.6
(1) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183960_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12745
Sequence Type Exemplar sequence
Representative Public ID F59A1.13 NCBI
Target Description F59A1.13 /REP_DB=WormBase Gene ID /WP=CE19907 /TR=Q9XUV7 /GB=CAB04538.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075074(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075074 NCBI Caenorhabditis elegans F59A1.13 (F59A1.13) mRNA, complete cds. 11/11 None
GENEFINDER00000002328 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17689839:17692675:-1 11/11 None
F59A1.13 ENSEMBL cdna:known chromosome:CEL140:V:17689839:17692650:-1 gene:F59A1.13 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002325 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17689838-17692650(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F59A1.13
Entrez Gene 186565 Entrez gene
SwissProt Q9XUV7 EMBL-EBI
WormBase CE19907 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04538 Hypothetical protein F59A1.13 [Caenorhabditis elegans] ref|NP_507475.1| F59A1.13 [Caenorhabditis elegans] 0.0
blast CAE58039 Hypothetical protein CBG01115 [Caenorhabditis briggsae] 1.0E-134
blast CAE58039 Hypothetical protein CBG01115 [Caenorhabditis briggsae] 1.0E-131
blast NP_503654 Y19D10A.11 [Caenorhabditis elegans] gb|AAK68411.2| Hypothetical protein Y19D10A.11 [Caenorhabditis elegans] 1.0E-130
blast NP_503654 Y19D10A.11 [Caenorhabditis elegans] gb|AAK68411.2| Hypothetical protein Y19D10A.11 [Caenorhabditis elegans] 1.0E-127
Protein Domains
Database ID Description E-Value
Pfam IPR005828 EMBL-EBI General substrate transporter 3.8E-6
Pfam IPR005828 EMBL-EBI General substrate transporter 3.8E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507475.1 11 40-59,66-83,98-120,127-149,159-178,219-241,256-274,287-309,313-335,348-370,385-404
F59A1.13 11 40-59,66-83,98-120,127-149,159-178,219-241,256-274,287-309,313-335,348-370,385-404
GENEFINDER00000002328 11 49-68,75-92,107-129,136-158,168-187,228-250,265-283,296-318,322-344,357-379,394-413
Sequence
Target Sequence 
>C. ELEGANS:183960_AT
agtgcttgtaggttggctgtcggtttttggcggcaatttcggattcaccattcttacgtt
gtatggaccaacttacttgaaggatgtcctaaatttcgacgtcaagaaaaccggatttgc
cacagctttaccatttatattaagtgcgttgtccaagtttgcagctgggcggatatcgga
tcgaatggactttttaaccgaaaaaatgcggttctcagtttgcacaatagtttcccaagg
aagtgtggtcattgggcttttgctaatggctatgacggagaactggcgaattgcacaatt
tgcgtacacttttgccataactgcgtcaggactgagtattgtgggaaatataaagtgtat
acagctgagatgccgccagcacactcattttgctctcactgtgagctctttgggaattta
cgcaaactactttggtgctccaatagtcgttggaatactcacctcagctgcagggaatac
tgcagaaaattggtctcacctattcataattgttgccgtggtaactgtcatcacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTGCTTGTAGGTTGGCTGTCGGTT 157 61 666 Antisense
TTTTGGCGGCAATTTCGGATTCACC 11 675 690 Antisense
CGGATTCACCATTCTTACGTTGTAT 80 243 705 Antisense
GATTTGCCACAGCTTTACCATTTAT 443 427 779 Antisense
GCGTTGTCCAAGTTTGCAGCTGGGC 442 291 811 Antisense
AGTGTGGTCATTGGGCTTTTGCTAA 316 59 907 Antisense
GCGTACACTTTTGCCATAACTGCGT 69 287 967 Antisense
ATACAGCTGAGATGCCGCCAGCACA 386 23 1024 Antisense
CACACTCATTTTGCTCTCACTGTGA 569 195 1045 Antisense
AATACTCACCTCAGCTGCAGGGAAT 707 171 1119 Antisense
GTTGCCGTGGTAACTGTCATCACAA 705 439 1177 Antisense
Sequence Source Affymetrix Proprietary Database